Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1022 ATGATGGCTAATCTTTTCATTCTCAAGTTCCCAAGTTTCAGTTCCAGTTTAAGGACTGTCTCTGCTTCAGCTTCATCAAATGGTGCTCATCCATTATCAGCAGGGAGTGGCAGCGGCAGTGGGCCAATGATCCTGGAGCTTCCTCTGGAGAAGATAAGGAGACCTCTAATGAGGACCAGAGCTAACGACCCCACTAAAGTCAAAGAACTAATGGACAGTATACAAGAAATTGGGCTTCAAGTACCCATTGATGTACTTGAAGTTGATGGAGTTTATTATGGTTTCTCTGGTTGTCATCGCTACGAAGCTCATCAACGCCTCGGGCTTCCTACAATCCGTTGCAAAATTCGTCGTGGAACCAAAGAAACCTTGAGGCACCACCTACGTTGA 390 45.64 MMANLFILKFPSFSSSLRTVSASASSNGAHPLSAGSGSGSGPMILELPLEKIRRPLMRTRANDPTKVKELMDSIQEIGLQVPIDVLEVDGVYYGFSGCHRYEAHQRLGLPTIRCKIRRGTKETLRHHLR 129
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13060437 13063460 - CcPI632755_01g010220.1 Cco01g1022 169884

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1022 129 PANTHER UNCHARACTERIZED 21 129 IPR016692 GO:0005737(PANTHER)|GO:0032542(InterPro)|GO:0032542(PANTHER)|GO:0034599(PANTHER)
Cco01g1022 129 Pfam ParB/Sulfiredoxin domain 46 123 IPR003115 -
Cco01g1022 129 SUPERFAMILY ParB/Sulfiredoxin 37 128 IPR036086 -
Cco01g1022 129 SMART ParB_7 45 124 IPR003115 -
Cco01g1022 129 Gene3D - 42 129 - -
Cco01g1022 129 FunFam Sulfiredoxin chloroplastic/mitochondrial 42 129 - -
Cco01g1022 129 CDD Srx 44 128 - -
Cco01g1022 129 PIRSF Sulfiredoxin 9 129 IPR016692 GO:0032542(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1022 K12260 - - csv:101217757 230.72
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g143 . . . . . . . . . Cmo18g00540 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00950 . Cec01g0975 Cco01g1022 Clacu01g0981 Cmu01g0934 Cre01g0863 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007624 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 36