Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1023 ATGGCTGCCGGGACATCTTTCTTGAGGCAATGTATAGCTACGACTACAAGAACATTGGTGACTGCGAAATTGAAACATTCCAGCAACCATTTCACGACTTTTCTCCTCCCACTTCGCACTCGCTCTCGAAGATTGACCATTCGTGCTGGTATCACAAACAATGAAGAAGTTGCTGCTAAAGCAGCTGCATCTGATGCAGACAGTGGAGCTCCAACCATATTTGACAAAATAATAGCCAAGGAAATTCTTTCGAACATTGTTTATGAGGATGATAAAGTCCTTGCATTCCGAGACATAAATCCACAGGCTCCTGTTCATGTATTAATCATTCCAAAGCTCAGAGATGGATTGACAGAGCTGGGAAAGGCTGAAGCAAGACATGGAGAGATACTGGGTCAGCTGCTGTATGCAGCCAAAATAGTGGCTGAGAAAGAGGGTATTGTTGAAGGATTTCGAGTAGTCATCAATAGTGGGGCAAGTGCTTGTCAATCTGTGTATCATCTTCACTTGCATGTCCTGGGAGGGAGACAGATGAAATGGCCTCCAGGTTGA 552 44.57 MAAGTSFLRQCIATTTRTLVTAKLKHSSNHFTTFLLPLRTRSRRLTIRAGITNNEEVAAKAAASDADSGAPTIFDKIIAKEILSNIVYEDDKVLAFRDINPQAPVHVLIIPKLRDGLTELGKAEARHGEILGQLLYAAKIVAEKEGIVEGFRVVINSGASACQSVYHLHLHVLGGRQMKWPPG 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13063739 13068101 + CcPI632755_01g010230.1 Cco01g1023 169885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1023 183 Pfam HIT domain 80 177 IPR011146 GO:0003824(InterPro)
Cco01g1023 183 Gene3D - 53 183 IPR036265 -
Cco01g1023 183 ProSiteProfiles HIT domain profile. 73 183 IPR011146 GO:0003824(InterPro)
Cco01g1023 183 PRINTS Histidine triad family signature 73 89 IPR001310 -
Cco01g1023 183 PRINTS Histidine triad family signature 94 112 IPR001310 -
Cco01g1023 183 PRINTS Histidine triad family signature 163 173 IPR001310 -
Cco01g1023 183 SUPERFAMILY HIT-like 71 182 IPR036265 -
Cco01g1023 183 PANTHER HISTIDINE TRIAD HIT PROTEIN 52 183 IPR001310 GO:0005737(PANTHER)|GO:0006790(PANTHER)|GO:0009150(PANTHER)|GO:0016787(PANTHER)|GO:0047627(PANTHER)
Cco01g1023 183 CDD PKCI_related 71 175 - -
Cco01g1023 183 ProSitePatterns HIT domain signature. 156 174 IPR019808 -
Cco01g1023 183 FunFam Histidine triad nucleotide-binding protein 1 53 183 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1023 Cco-Chr1:13063739 Cco10g1670 Cco-Chr10:30098640 8.10E-45 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1023 - - - 0.0