Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1024 ATGTATTCCACCATTAAAGCCTGTACCTGCTTAGTCTTCCTCAGTTTCTTCCTTCCTCTTTATCGTTCTACAAATTCTCAATTCCAGCTTCCATTTTCCCCAACAATGGCGCGAAAATCTTCTCTCCTCAAGCGAACCCTAGCTTCTCTCTGCTTTATTCTCGCCCTATATGCCATTGTTAACACCTTCATCAGCTCCACAGCCACTCTCAAGCTCGACCGCTCCTTCCCCTTCAGCACTGCCAATTCCGTTATGGTCTCCGACGAATTTGGTTCCCAAGACACTGATCTCCTCAACACCTCTGCGAAATCCGTCTCTCCGGTCAAGATTTACCTCTACGATGTGCCCACCAGGTTTACGTACGGTGTAATTGAGAACCACGGCATAGCGCGCGGAGGAAAATCCGTCCCTAAAGTCACGGACCTTAAGTATCCAGGCCATCAGCATATGGCCGAGTGGTATCTGTTCACGGATCTGCTTCGACCGGAGTCGGAGCGTATTGGGTCTGCTGTGGTTAGGGTTTTCGATCCGGAGGAAGCGGATTTGTATTATGTACCGTTCTTCTCGTCCTTAAGCTTGATTGTCAACCCTATCCGACCTGCAACGGGGTCGGATCAGCAGCAACGAAAGCTTGTGTACAGTGACGAGGAGACGCAGGATGCCTTCATGGAGTGGTTGGAGAAGCAGGAGTACTGGAAGCGGAACTATGGGCGGGATCACGTCATTGTAGCGCAGGACCCTAATGCATTGTACAGGGTGATTGATAGGGTTAAGAACAGTATCTTGCTCGTTTCGGATTTCGGCCGGTTGAGGGCTGACCAAGCCTCGCTAGTTAAGGACGTGATTTTACCATACTCCCATAGGATCAATACTTATAATGGTGACATCGGAGTTGAGAATCGCAAGACTTTATTGTTCTTCATGGGCAATCGATTCCGTAAAGAGGGAGGAAAGATACGTGATATGCTTTTCGATATTCTTGAGGAAGAACGGGATGTCATAATCAAACATGGAACACAATCACGAGAGAGCCGGCGTGCTGCTACACATGGGATGCATACATCTAAGTTCTGCTTGAATCCAGCTGGTGACACTCCCTCTGCGTGTCGACTTTTTGATTCTGTAGTAAGCTTATGTGTACCAGTGATTGTCAGCGATAGTATTGAGTTGCCTTTCGAAGATGTTATAGATTACTCCAAGATTGCGGTGTTTTTTGATTCGGTTTCTGCTGTGAAACCTGGATTTCTGATTTCAAAGCTGAGGAGAATATCCAAAGAGAGGATTCTGGAGTATCAGAGAGAAATGAAAGAGATAAAGAGATACTTTGAGTATACAGACTCAAATGGCACAGTGAACGAAATATGGCGCCAAGTCTCGCAGAAGTTACCTCTAATTAAGCTAATGATTAATCGTGGAAGGAGGCTCATTCATAGAGATGGTGATGAACCAGACTGCTCTTGTCTCTGTTCAAACCAAACTGGCATCAGGGCTAGACTATAA 1500 46.47 MYSTIKACTCLVFLSFFLPLYRSTNSQFQLPFSPTMARKSSLLKRTLASLCFILALYAIVNTFISSTATLKLDRSFPFSTANSVMVSDEFGSQDTDLLNTSAKSVSPVKIYLYDVPTRFTYGVIENHGIARGGKSVPKVTDLKYPGHQHMAEWYLFTDLLRPESERIGSAVVRVFDPEEADLYYVPFFSSLSLIVNPIRPATGSDQQQRKLVYSDEETQDAFMEWLEKQEYWKRNYGRDHVIVAQDPNALYRVIDRVKNSILLVSDFGRLRADQASLVKDVILPYSHRINTYNGDIGVENRKTLLFFMGNRFRKEGGKIRDMLFDILEEERDVIIKHGTQSRESRRAATHGMHTSKFCLNPAGDTPSACRLFDSVVSLCVPVIVSDSIELPFEDVIDYSKIAVFFDSVSAVKPGFLISKLRRISKERILEYQREMKEIKRYFEYTDSNGTVNEIWRQVSQKLPLIKLMINRGRRLIHRDGDEPDCSCLCSNQTGIRARL 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13072609 13076820 - CcPI632755_01g010240.1 Cco01g1024 169886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1024 499 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 89 458 IPR004263 GO:0006486(InterPro)|GO:0016757(InterPro)
Cco01g1024 499 Pfam Exostosin family 106 419 IPR040911 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1024 Cco-Chr1:13072609 Cco09g1069 Cco-Chr9:10212505 5.20E-70 dispersed
Cco01g1024 Cco-Chr1:13072609 Cco08g1162 Cco-Chr8:23416550 2.20E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1024 K23200 - csv:101216577 875.159