Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1034 ATGGCTCTCCGGGACTTCCTCTTCCTGTTTTTCTTCTTGATCTTTGGTTGTATTCCATTTACTCGTGCTCTTACCGATGCTTCTGATGTTCAAGCTTTGCAAGTTATATACACCTCATTGAACAGTCCTCCTCAGCTGACTGGTTGGATTGGTAATGGAGGCGATCCATGTGTAGAGTCATGGAAAGGGGTGACTTGTGAAGGATCTGCTGTTGTTTCCATTGAGATTTCTGGGTTAGGGCTGAATGGAACGATGGGTTATGCGCTCTCAAGTTTTTTGTCATTGAAAAAGCTTGATATGAGCGACAACAATATTCATGACACGATTCCTTACCAATTGCCGCCGAACCTCACAAGCCTAAATATGGCAAAAAACAGCTTAAGTGGTAATCTTCCTTATTCCTTTTCCACCATGGCTTCTCTCAATTATTTGAATATGAGCCACAATTTGCTATCTCAGGCGATAGGAGATGTTTTCACCAATCTTACTACCCTCGGGACCTTGGACCTTTCTTTCAACAACTTTACTGGGGATCTTCCCAAGTCCTTGGGAACTTTATCCAATGTTTCTTCCTTGTTTTTGCAGAACAACCAATTGACTGGCTCTCTCAATATTCTTATCGATTTGCCTCTGACCACTCTAAATGTAGCAAATAATAATTTCAGTGGATGGATACCTCAAGAACTGAAGTCGGTTGAAAATTTCATGTATGATGGAAATTCATTTGACCATAGTCCTGCACCTCCTCCACCACCTTTTACTCCACCTCCTCCTGGTAGATCTCGTAGTAGCCCCAGACATCCTGGGTCTAGCGGTGGCACCCATACTGCCCCAAGTTCTGATGGCAGCTCATCCTACTCAAACAAAGGCTTGCCAGTTTTGGCTATAGTGGGGATAATTTTGGGTGCTATAATTTTTGTCCTCATTGTGTTAGTTGCTTTTGCTGTCTGCATCCAGAAGAGAAAACGAAAGAACATTGGTCTTCGAGCTTCCAGTGGAAGGCTGTCTGTTGGCACCAGTGTGAATGCTGAGGTGCAAGAGCATCGGGTGAAAAGTGTTGCTGCTGTTGCCGATATTAAGCCTCTTCCTGCAGAGAAAATGAATCCTGAGAGGTTACCGGCGAAAAATGGATCGGTGAAAAGAATAAAGTCCCCTATTACTGCTACTTCATACACCGTTGCTTCCCTTCAAACTGCAACAAATAGTTTCAGCCAAGAATGCATAGTTGGTGAAGGTTCTCTTGGTCGGGTTTACAAAGCTGACTTTCCTAACGGGAAGATAATGGCGATTAAGAAAATCGATAATGCAGCGCTGTCACTACAGGAAGAAGACAATTTTCTTGAAGCAGTTTCAAACATGTCAAGGTTGAGGCATACAAACATTGTCACACTAAATGGTTATTGTGCAGAGCACGGCCAGCGTCTTCTAGTTTATGAGTTCATTGGAAATGGAAGTTTACATGACATGCTGCATTTTGCTGAAGAAAGTAGTAAGACACTGACTTGGAACGCACGTGTCCGGGTAGCACTTGGAACTGCTAGAGCTTTAGAATACTTGCATGAGGTTTGCTTGCCTTCTGTTGTACATAGAAACTTGAAGACTGCAAACATATTACTTGATGAAGATCTCAATCCCCATTTGTCAGATTGTGGTTTGGCTGCTTTAACACCCAACACAGAGCGGCAGATTTCTACTCAGATGGTTGGTTCATTTGGCTATAGTGCTCCAGAATTTGCCTTGTCAGGAATATACACCGTCAAAAGTGACGTGTACAGCTTTGGGGTGGTGATGTTGGAGCTCTTGACTGGCCGAAAGCCACTTGACAGTTCTAGGGTGAGATCAGAGCAGTCACTTGTGAGATGGGCTACTCCCCAACTACATGATATCGACGCCTTAGCAAAAATGGTAGATCCTACTTTGAACGGAATGTACCCTGCGAAATCTCTGTCCCGCTTTGCTGACATCATTGCTCTCTGTGTTCAGCCTGAGCCCGAATTTCGACCTCCCATGTCCGAAGTAGTACAAGCACTGGTGCGTTTAGTGCAAAGAGCGAGTGTGGTAAAAAGGCATTCGAGCGACGAGACAGGTTTCAGTTACAGAACGCCTGAGCACGATGCAGTCGAGTTGCCATTTTGA 2136 44.29 MALRDFLFLFFFLIFGCIPFTRALTDASDVQALQVIYTSLNSPPQLTGWIGNGGDPCVESWKGVTCEGSAVVSIEISGLGLNGTMGYALSSFLSLKKLDMSDNNIHDTIPYQLPPNLTSLNMAKNSLSGNLPYSFSTMASLNYLNMSHNLLSQAIGDVFTNLTTLGTLDLSFNNFTGDLPKSLGTLSNVSSLFLQNNQLTGSLNILIDLPLTTLNVANNNFSGWIPQELKSVENFMYDGNSFDHSPAPPPPPFTPPPPGRSRSSPRHPGSSGGTHTAPSSDGSSSYSNKGLPVLAIVGIILGAIIFVLIVLVAFAVCIQKRKRKNIGLRASSGRLSVGTSVNAEVQEHRVKSVAAVADIKPLPAEKMNPERLPAKNGSVKRIKSPITATSYTVASLQTATNSFSQECIVGEGSLGRVYKADFPNGKIMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHTNIVTLNGYCAEHGQRLLVYEFIGNGSLHDMLHFAEESSKTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKTANILLDEDLNPHLSDCGLAALTPNTERQISTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRHSSDETGFSYRTPEHDAVELPF 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13238916 13244120 + CcPI632755_01g010340.1 Cco01g1034 169896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1034 711 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 481 691 - -
Cco01g1034 711 CDD STKc_IRAK 409 680 - -
Cco01g1034 711 Gene3D Transferase(Phosphotransferase) domain 1 481 704 - -
Cco01g1034 711 Gene3D Ribonuclease Inhibitor 25 252 IPR032675 -
Cco01g1034 711 MobiDBLite consensus disorder prediction 264 285 - -
Cco01g1034 711 MobiDBLite consensus disorder prediction 244 263 - -
Cco01g1034 711 MobiDBLite consensus disorder prediction 240 285 - -
Cco01g1034 711 SUPERFAMILY Protein kinase-like (PK-like) 383 677 IPR011009 -
Cco01g1034 711 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Cco01g1034 711 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 26 253 - -
Cco01g1034 711 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 211 682 IPR046959 -
Cco01g1034 711 Gene3D Phosphorylase Kinase; domain 1 366 480 - -
Cco01g1034 711 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Cco01g1034 711 ProSiteProfiles Protein kinase domain profile. 403 680 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g1034 711 SUPERFAMILY L domain-like 25 232 - -
Cco01g1034 711 Pfam Leucine Rich Repeat 165 186 IPR001611 GO:0005515(InterPro)
Cco01g1034 711 Pfam Leucine Rich Repeat 211 230 IPR001611 GO:0005515(InterPro)
Cco01g1034 711 Pfam Leucine Rich Repeat 94 113 IPR001611 GO:0005515(InterPro)
Cco01g1034 711 Pfam Leucine Rich Repeat 116 137 IPR001611 GO:0005515(InterPro)
Cco01g1034 711 Pfam Protein kinase domain 406 675 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g1034 711 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 368 480 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1034 Cco-Chr1:13238916 Cco08g0620 Cco-Chr8:16308947 8.60E-135 dispersed
Cco08g0427 Cco-Chr8:10021104 Cco01g1034 Cco-Chr1:13238916 1.20E-22 dispersed
Cco01g1034 Cco-Chr1:13238916 Cco07g1502 Cco-Chr7:29092005 1.20E-147 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86516 PF00069 Pkinase 3.50E-44 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1034 - - - 0.0