Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1034 ATGGCTCTCCGGGACTTCCTCTTCCTGTTTTTCTTCTTGATCTTTGGTTGTATTCCATTTACTCGTGCTCTTACCGATGCTTCTGATGTTCAAGCTTTGCAAGTTATATACACCTCATTGAACAGTCCTCCTCAGCTGACTGGTTGGATTGGTAATGGAGGCGATCCATGTGTAGAGTCATGGAAAGGGGTGACTTGTGAAGGATCTGCTGTTGTTTCCATTGAGATTTCTGGGTTAGGGCTGAATGGAACGATGGGTTATGCGCTCTCAAGTTTTTTGTCATTGAAAAAGCTTGATATGAGCGACAACAATATTCATGACACGATTCCTTACCAATTGCCGCCGAACCTCACAAGCCTAAATATGGCAAAAAACAGCTTAAGTGGTAATCTTCCTTATTCCTTTTCCACCATGGCTTCTCTCAATTATTTGAATATGAGCCACAATTTGCTATCTCAGGCGATAGGAGATGTTTTCACCAATCTTACTACCCTCGGGACCTTGGACCTTTCTTTCAACAACTTTACTGGGGATCTTCCCAAGTCCTTGGGAACTTTATCCAATGTTTCTTCCTTGTTTTTGCAGAACAACCAATTGACTGGCTCTCTCAATATTCTTATCGATTTGCCTCTGACCACTCTAAATGTAGCAAATAATAATTTCAGTGGATGGATACCTCAAGAACTGAAGTCGGTTGAAAATTTCATGTATGATGGAAATTCATTTGACCATAGTCCTGCACCTCCTCCACCACCTTTTACTCCACCTCCTCCTGGTAGATCTCGTAGTAGCCCCAGACATCCTGGGTCTAGCGGTGGCACCCATACTGCCCCAAGTTCTGATGGCAGCTCATCCTACTCAAACAAAGGCTTGCCAGTTTTGGCTATAGTGGGGATAATTTTGGGTGCTATAATTTTTGTCCTCATTGTGTTAGTTGCTTTTGCTGTCTGCATCCAGAAGAGAAAACGAAAGAACATTGGTCTTCGAGCTTCCAGTGGAAGGCTGTCTGTTGGCACCAGTGTGAATGCTGAGGTGCAAGAGCATCGGGTGAAAAGTGTTGCTGCTGTTGCCGATATTAAGCCTCTTCCTGCAGAGAAAATGAATCCTGAGAGGTTACCGGCGAAAAATGGATCGGTGAAAAGAATAAAGTCCCCTATTACTGCTACTTCATACACCGTTGCTTCCCTTCAAACTGCAACAAATAGTTTCAGCCAAGAATGCATAGTTGGTGAAGGTTCTCTTGGTCGGGTTTACAAAGCTGACTTTCCTAACGGGAAGATAATGGCGATTAAGAAAATCGATAATGCAGCGCTGTCACTACAGGAAGAAGACAATTTTCTTGAAGCAGTTTCAAACATGTCAAGGTTGAGGCATACAAACATTGTCACACTAAATGGTTATTGTGCAGAGCACGGCCAGCGTCTTCTAGTTTATGAGTTCATTGGAAATGGAAGTTTACATGACATGCTGCATTTTGCTGAAGAAAGTAGTAAGACACTGACTTGGAACGCACGTGTCCGGGTAGCACTTGGAACTGCTAGAGCTTTAGAATACTTGCATGAGGTTTGCTTGCCTTCTGTTGTACATAGAAACTTGAAGACTGCAAACATATTACTTGATGAAGATCTCAATCCCCATTTGTCAGATTGTGGTTTGGCTGCTTTAACACCCAACACAGAGCGGCAGATTTCTACTCAGATGGTTGGTTCATTTGGCTATAGTGCTCCAGAATTTGCCTTGTCAGGAATATACACCGTCAAAAGTGACGTGTACAGCTTTGGGGTGGTGATGTTGGAGCTCTTGACTGGCCGAAAGCCACTTGACAGTTCTAGGGTGAGATCAGAGCAGTCACTTGTGAGATGGGCTACTCCCCAACTACATGATATCGACGCCTTAGCAAAAATGGTAGATCCTACTTTGAACGGAATGTACCCTGCGAAATCTCTGTCCCGCTTTGCTGACATCATTGCTCTCTGTGTTCAGCCTGAGCCCGAATTTCGACCTCCCATGTCCGAAGTAGTACAAGCACTGGTGCGTTTAGTGCAAAGAGCGAGTGTGGTAAAAAGGCATTCGAGCGACGAGACAGGTTTCAGTTACAGAACGCCTGAGCACGATGCAGTCGAGTTGCCATTTTGA 2136 44.29 MALRDFLFLFFFLIFGCIPFTRALTDASDVQALQVIYTSLNSPPQLTGWIGNGGDPCVESWKGVTCEGSAVVSIEISGLGLNGTMGYALSSFLSLKKLDMSDNNIHDTIPYQLPPNLTSLNMAKNSLSGNLPYSFSTMASLNYLNMSHNLLSQAIGDVFTNLTTLGTLDLSFNNFTGDLPKSLGTLSNVSSLFLQNNQLTGSLNILIDLPLTTLNVANNNFSGWIPQELKSVENFMYDGNSFDHSPAPPPPPFTPPPPGRSRSSPRHPGSSGGTHTAPSSDGSSSYSNKGLPVLAIVGIILGAIIFVLIVLVAFAVCIQKRKRKNIGLRASSGRLSVGTSVNAEVQEHRVKSVAAVADIKPLPAEKMNPERLPAKNGSVKRIKSPITATSYTVASLQTATNSFSQECIVGEGSLGRVYKADFPNGKIMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHTNIVTLNGYCAEHGQRLLVYEFIGNGSLHDMLHFAEESSKTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKTANILLDEDLNPHLSDCGLAALTPNTERQISTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRHSSDETGFSYRTPEHDAVELPF 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13238916 13244120 + CcPI632755_01g010340.1 Cco01g1034 169896

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1034 711 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 481 691 - -
Cco01g1034 711 CDD STKc_IRAK 409 680 - -
Cco01g1034 711 Gene3D Transferase(Phosphotransferase) domain 1 481 704 - -
Cco01g1034 711 Gene3D Ribonuclease Inhibitor 25 252 IPR032675 -
Cco01g1034 711 MobiDBLite consensus disorder prediction 264 285 - -
Cco01g1034 711 MobiDBLite consensus disorder prediction 244 263 - -
Cco01g1034 711 MobiDBLite consensus disorder prediction 240 285 - -
Cco01g1034 711 SUPERFAMILY Protein kinase-like (PK-like) 383 677 IPR011009 -
Cco01g1034 711 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Cco01g1034 711 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 26 253 - -
Cco01g1034 711 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 211 682 IPR046959 -
Cco01g1034 711 Gene3D Phosphorylase Kinase; domain 1 366 480 - -
Cco01g1034 711 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Cco01g1034 711 ProSiteProfiles Protein kinase domain profile. 403 680 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g1034 711 SUPERFAMILY L domain-like 25 232 - -
Cco01g1034 711 Pfam Leucine Rich Repeat 165 186 IPR001611 GO:0005515(InterPro)
Cco01g1034 711 Pfam Leucine Rich Repeat 211 230 IPR001611 GO:0005515(InterPro)
Cco01g1034 711 Pfam Leucine Rich Repeat 94 113 IPR001611 GO:0005515(InterPro)
Cco01g1034 711 Pfam Leucine Rich Repeat 116 137 IPR001611 GO:0005515(InterPro)
Cco01g1034 711 Pfam Protein kinase domain 406 675 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g1034 711 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 368 480 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1034 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1034 Cco-Chr1:13238916 Cco08g0620 Cco-Chr8:16308947 8.60E-135 dispersed
Cco08g0427 Cco-Chr8:10021104 Cco01g1034 Cco-Chr1:13238916 1.20E-22 dispersed
Cco01g1034 Cco-Chr1:13238916 Cco07g1502 Cco-Chr7:29092005 1.20E-147 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco02g0132 . 34 788 Strubbelig Receptor Gene Family AT4G03390 62.3 6.6e-205 711.1
Cco04g2060 . 17 752 Strubbelig Receptor Gene Family AT4G03390 54.2 2.8e-163 572.8
Cco09g0147 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.1 1.3e-91 334.7
Cco10g1720 . 1 726 Strubbelig Receptor Gene Family AT5G06820 53.7 6.5e-186 647.9
Cco08g0620 . 22 704 Strubbelig Receptor Gene Family AT1G78980 60.8 1.3e-196 683.3
Cco07g1502 . 145 829 Strubbelig Receptor Gene Family AT1G78980 51.0 2.6e-144 509.6
Cco08g0620 . 20 682 Strubbelig Receptor Gene Family AT3G13065 53.9 1.7e-148 523.5
Cco01g1034 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 6.1e-85 312.4
Cco10g1720 . 1 726 Strubbelig Receptor Gene Family AT5G06820 53.7 6.5e-186 647.9
Cco02g0132 . 34 788 Strubbelig Receptor Gene Family AT4G03390 62.3 6.6e-205 711.1
Cco04g2060 . 17 752 Strubbelig Receptor Gene Family AT4G03390 54.2 2.8e-163 572.8
Cco09g0147 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.1 1.3e-91 334.7
Cco08g0620 . 20 682 Strubbelig Receptor Gene Family AT3G13065 53.9 1.7e-148 523.5
Cco08g0620 . 22 704 Strubbelig Receptor Gene Family AT1G78980 60.8 1.3e-196 683.3
Cco07g1502 . 145 829 Strubbelig Receptor Gene Family AT1G78980 51.0 2.6e-144 509.6
Cco07g1502 . 146 829 Strubbelig Receptor Gene Family AT1G53730 59.5 2.9e-194 675.6
Cco09g0147 . 1 712 Strubbelig Receptor Gene Family AT1G53730 60.5 6.4e-186 647.9
Cco01g1034 . 9 689 Strubbelig Receptor Gene Family AT1G53730 51.4 4.5e-147 518.8
Cco07g1502 . 146 824 Strubbelig Receptor Gene Family AT3G14350 56.1 4.5e-173 605.1
Cco09g0147 . 6 702 Strubbelig Receptor Gene Family AT3G14350 55.3 8.3e-167 584.3
Cco01g1034 . 201 711 Strubbelig Receptor Gene Family AT4G22130 68.3 2.5e-177 619.0
Cco07g1502 . 508 836 Strubbelig Receptor Gene Family AT4G22130 62.8 8.9e-119 424.5
Cco09g0147 . 391 704 Strubbelig Receptor Gene Family AT4G22130 64.9 1.7e-117 420.2
Cco02g0132 . 485 790 Strubbelig Receptor Gene Family AT4G22130 59.9 3.5e-107 386.0
Cco08g0620 . 357 704 Strubbelig Receptor Gene Family AT4G22130 52.4 9.3e-100 361.3
Cco04g2060 . 464 752 Strubbelig Receptor Gene Family AT4G22130 59.5 2.3e-98 356.7
Cco10g1720 . 387 709 Strubbelig Receptor Gene Family AT4G22130 52.0 5.5e-92 335.5
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86516 PF00069 Pkinase 3.50E-44 CL0016 Cco PK