Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1038 ATGGAAGATAATGCGTTAAAAAACAACAAAGAAATGATAATGGAGGATTCACACAATAAGCTTCTAGAAAACACTATAAAAAGCTACACAAAGCTCCATAGCTTCAAGCAAATTTTCAATGGCTTTGCAGTTCACACAAGCCCATCACAAGCCTCAAAGCTTAGGGAAGTTGATGGAGTGAAATTGGTTGAGTTAGATAGAGGAGTGAGGAAAATGACTACTTATACCCCTGAGTTTCTAGGACTAGTGCCCTCCAATAATCATAAATATTATTATAATTATAGTGTTATTGGTGGTGGTGGTGAAGGCATTTTGATTGGGTTTGTGGACTCTGGTATTTACCCAACACACCCAAGTTTTAGTTTTGGTAATTTTGATCATCAAGAAGAGGAGTTGTTTTGTGGGGTTTGTGAAGAAGGTCCTTTTTTCCCAAAAGCTTCTTGCAATGGAAAGATAGTGAGTGCAAGGTTTTTCTCTACTGGGGCTCAGGCTGTTGCAAAGCTTAACTCTTCTCTTGATTTTCTCTCTCCATTTGATGCGGAAGGCCATGGAAGCCATGTGGCATCCATAGCCGCTGGGAATGCAGGTGTTCCAGTTATTGTAAATGGTTTCTTCTATGGATTGGCCAGTGGAATCGCACCACGTGCACGAATTGCTGTTTACAAGGCCGTGTATCCAACGGTGGCTACTCTAACCGATGTAATTTCAGCAATAGATCAAGCAGTGGTTGATGGGGTTGATATATTGGCATTATCGGTTGGACCAAATGAACCGCCCGAGGTAGGATTGACCTTCCTAAGCATATATGACATTGCCATATTATCTGCTACAAGAGCTGGAATCCTTGTTGTTCAAGCAGCCGGAAATAATGGCCCGGCCCGGGCAACCGTCGTCTCTTACAGCCCTTGGGCTATCGGCGTTGCAGCCTCCGGCACCGACAGAGTTTATTTGGCCTCACTTCTTCTCGGCAATGGCCAAAAAATTGTAGGAGTAGCACTCTCTGGACCTACCTTAGGGAGGGAGTTTTTCCTACACAAGTTAGTATTGGCTGAGGATGCAAAGAGGCCAAATGAAACGCATCCGAACGTAAATTACAATGAAGAGTGCCAAAATCCCGAAGCTTTTGACCCAAATATTGTTGAAAATAGCATAGTCCTCTGCTCTTTCTCACAAGGATTCCTCAATGGAACCTCCTCTCTTAAAGCCATCATTCACACTGCAACAACACTCAGATTCATGGGTTTTGTTCTCCTTGCAAATCCAAACTATGGTGATTTCATTGCAGAGCCCATCCCTTTCAAAGTTCCCGGCATTCTCGTCCCGGCCGTATCAGATACTAAGGTGATACTGAAATACTATGAAGAAAATACATGGAAGGATAGAAGGGGAATTGTTAGTGAATTTAAAGGGAAAGCAGGCATTGGAGAAGGAAGAGTTGCTTCATTTGGAAGGCAAGCAGCCAGTGTTAGCAGATTTTCATCAAGAGGACCAGATTACATTAACATAAATAGGACTATAGCTGATGTACTAAAGCCAGATATTCTTGCACCAGGTCACCAAATCTGGGCTGCTTGGAGCCCTCTTAGTGCCTCACAGCCACTTTTAAATGGATACCATTTTGCACTGTTATCTGGAACAAGTATGGCAGCACCTCATATTGTGGGAATAGCAGCACTTATCAAGCAAAAGTATCCTTCTTGGACTCCTTCCATGATAGCTTCTGCAATGTCCACAACTGCTACAAAGTATGATATGAATGGAGACCTTATTCAGGCAGAGGGATTCAATCTTCATAGTTTATATCCTTCTACTCCCTTCGATTTTGGCGCTGGCCTCGTTTCTCCGACCAACGCTTTGGACCCGGGACTCGTCTTCCCTTCAGAATATGAAGACTATATAAACTTCTTGTGCTCTTTACCTGGGGTCGATCCTACCGTCATCAGAAGCACCACCGGAGGACAGTGCAATGCCTCTATCCCACAGCCACACCCTGCAGATCTGAACCTTCCTTCAGTCACCATATCATCATTGGTTGGGAATCAGGTAGTGCAGAGAAGAGTGAAGAATGTAGGAGGCAAAGTGGAGACTTATGTGTGGTCAGTGATACCGCCAAATGGGACAACAGTCAACATCAATCCGCCATGGTTCACCGTAGCGCCCGAAGAAGTCCAAAACTTGGAAATACAAATCAATGTCACACACAAAATGGATCATTTTACCTTCGGGGAGATTATTTTGACAGGAAGTTTAAACCATATTGCAAGAATCCCTTTGTCAGTTTTGGCTGTTTCTGCATCCTGA 2301 43.68 MEDNALKNNKEMIMEDSHNKLLENTIKSYTKLHSFKQIFNGFAVHTSPSQASKLREVDGVKLVELDRGVRKMTTYTPEFLGLVPSNNHKYYYNYSVIGGGGEGILIGFVDSGIYPTHPSFSFGNFDHQEEELFCGVCEEGPFFPKASCNGKIVSARFFSTGAQAVAKLNSSLDFLSPFDAEGHGSHVASIAAGNAGVPVIVNGFFYGLASGIAPRARIAVYKAVYPTVATLTDVISAIDQAVVDGVDILALSVGPNEPPEVGLTFLSIYDIAILSATRAGILVVQAAGNNGPARATVVSYSPWAIGVAASGTDRVYLASLLLGNGQKIVGVALSGPTLGREFFLHKLVLAEDAKRPNETHPNVNYNEECQNPEAFDPNIVENSIVLCSFSQGFLNGTSSLKAIIHTATTLRFMGFVLLANPNYGDFIAEPIPFKVPGILVPAVSDTKVILKYYEENTWKDRRGIVSEFKGKAGIGEGRVASFGRQAASVSRFSSRGPDYININRTIADVLKPDILAPGHQIWAAWSPLSASQPLLNGYHFALLSGTSMAAPHIVGIAALIKQKYPSWTPSMIASAMSTTATKYDMNGDLIQAEGFNLHSLYPSTPFDFGAGLVSPTNALDPGLVFPSEYEDYINFLCSLPGVDPTVIRSTTGGQCNASIPQPHPADLNLPSVTISSLVGNQVVQRRVKNVGGKVETYVWSVIPPNGTTVNINPPWFTVAPEEVQNLEIQINVTHKMDHFTFGEIILTGSLNHIARIPLSVLAVSAS 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13424511 13436226 - CcPI632755_01g010380.1 Cco01g1038 169900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1038 766 Gene3D - 636 763 - -
Cco01g1038 766 ProSiteProfiles Serine proteases, subtilase domain profile. 77 619 - -
Cco01g1038 766 Gene3D Peptidase S8/S53 domain 103 632 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco01g1038 766 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 1 70 IPR037045 -
Cco01g1038 766 Pfam Peptidase inhibitor I9 11 70 IPR010259 -
Cco01g1038 766 SUPERFAMILY Subtilisin-like 72 623 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco01g1038 766 PRINTS Subtilisin serine protease family (S8) signature 179 192 IPR015500 -
Cco01g1038 766 PRINTS Subtilisin serine protease family (S8) signature 544 560 IPR015500 -
Cco01g1038 766 PRINTS Subtilisin serine protease family (S8) signature 101 120 IPR015500 -
Cco01g1038 766 Pfam Fibronectin type-III domain 666 760 IPR041469 -
Cco01g1038 766 ProSitePatterns Serine proteases, subtilase family, histidine active site. 183 193 IPR022398 -
Cco01g1038 766 ProSitePatterns Serine proteases, subtilase family, serine active site. 545 555 IPR023828 -
Cco01g1038 766 Gene3D - 313 482 - -
Cco01g1038 766 CDD PA_subtilisin_like 319 457 - -
Cco01g1038 766 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 106 117 IPR023827 -
Cco01g1038 766 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 18 719 IPR045051 -
Cco01g1038 766 Pfam Subtilase family 101 586 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1038 Cco-Chr1:13424511 Cco11g1214 Cco-Chr11:24120027 2.20E-160 dispersed
Cco01g1038 Cco-Chr1:13424511 Cco05g0916 Cco-Chr5:7916287 1.40E-82 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1038 - - - 0.0