Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1113 ATGACGAGAAAGAAGGTGAAACTTGCATACATCACAAATGACGCAGCAAGGAAAGCTACATTCAAGAAAAGGAAGAAAGGATTACTCAAGAAGCTCACTGAGCTCACCACTCTGTGCGGGATTGAGGCATGTGCCATAATCTTTAGCCCCTTTGATTCCCAACTTGATCTCTGGCCTTCTACCTTGGGGTTCCAGAGAGTTCTCTCTAAGTTCAAAAGCCTACCAGAGATGGAGCAATGCAAGAAGATGGTCAACCAAGAGACGTTCCTCCGTGACCGGATCGCCAAGGCTGCCGACCAACTCAAGAAGTTGCAGAGGGAGAATCGCGAGAAGGAGATTGCTCGACTCATGTTTCAGAGCCTCGTAGTAGGAGCTGCGCCACCGCCCGATCTCAATGTCATTGATTTGAACGATCTTGGGTGGCTTGTTGATCAAACAATGGTTGATATTAATAAAAGGATGGGGTTGCTTACGGCGAAGCAACCGCGTGTAGAGGCGGTGGAGCCGTCGTGGTTCATGGAGATGGTGAGTCAAGAAGTTGATGATGATGATCAAATGAGATTCAACATTGGGGATGACGTGATTCAACTTCCAAGTTTTGGGGAGAATGATAACTGTGGTGCTTTTTGGTCAAATAATGCCTTTTTCCCTTGA 654 46.94 MTRKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFDSQLDLWPSTLGFQRVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEIARLMFQSLVVGAAPPPDLNVIDLNDLGWLVDQTMVDINKRMGLLTAKQPRVEAVEPSWFMEMVSQEVDDDDQMRFNIGDDVIQLPSFGENDNCGAFWSNNAFFP 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15742359 15743012 + CcPI632755_01g011130.1 Cco01g1113 169975

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1113 217 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco01g1113 217 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Cco01g1113 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco01g1113 217 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Cco01g1113 217 Coils Coil 87 114 - -
Cco01g1113 217 Gene3D - 13 97 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco01g1113 217 PANTHER MADS BOX PROTEIN 1 115 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco01g1113 217 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco01g1113 217 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco01g1113 217 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco01g1113 217 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco01g1113 217 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1113 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1113 Cco-Chr1:15742359 Cco03g1853 Cco-Chr3:33239633 1.10E-64 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco10g0973 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 7.3e-51 198.0
Cco07g1016 . 41 225 Type I MADS-box Gene Family AT1G77950 51.0 2.0e-41 166.4
Cco03g1853 . 1 167 Type I MADS-box Gene Family AT5G48670 63.5 5.2e-55 211.8
Cco01g1113 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.5e-46 183.7
Cco10g0973 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 7.3e-51 198.0
Cco07g1016 . 41 225 Type I MADS-box Gene Family AT1G77950 51.0 2.0e-41 166.4
Cco03g1853 . 1 167 Type I MADS-box Gene Family AT5G48670 63.5 5.2e-55 211.8
Cco01g1113 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.5e-46 183.7
Cco10g0973 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 7.3e-51 198.0
Cco03g1853 . 1 167 Type I MADS-box Gene Family AT5G48670 63.5 5.2e-55 211.8
Cco01g1113 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.5e-46 183.7
Cco07g1016 . 41 225 Type I MADS-box Gene Family AT1G77950 51.0 2.0e-41 166.4
Cco10g0973 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 7.3e-51 198.0
Cco03g1853 . 1 167 Type I MADS-box Gene Family AT5G48670 63.5 5.2e-55 211.8
Cco01g1113 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.5e-46 183.7
Cco07g1016 . 41 225 Type I MADS-box Gene Family AT1G77950 51.0 2.0e-41 166.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001414 5 4 2 4 3 2 4 2 2 2 2 2 2 2 3 2 2 3 4 2 2 3 2 2 2 2 2 2 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58615 PF00319 SRF-TF 4.50E-17 No_clan Cco TF