Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1115 ATGGCCATCTCCATTGCCTTCTCGACGAACACCCACTTCCCATTTTCTACAATTTGCAGATCAATTTCCTCTCTCAGTCCATCCGTCGATGTTCTTTTTAACGCCAGGAGAGATTGCAATCGTGGGTTTCCCTTAATTAGAACATTGGACACCAAATTGGCAAAAACCAGGGCTGCATTGTCTGAAATTTCTTACCGCAAGCAGTACCCAAAAGTGGGTGCCAAATCTATTGGACCCATTCCACCTGCCCAGCTAATTCAAGTCGTTGAGAATGCTGCCAAGACAGGAGCCGAGGTGGTGATGGATGCTGTTAATAAGCCTCGGAATATTGAATATAAAGGATTGGCGGACTTAGTAACGGAAACAGATAAAATGAGTGAGGCTGCTATTCTGGAAGTCGTTAGAAAGAACTTTAGAGATCACCTCATCCTTGGAGAAGAGGGAGGAGTTATAGGGGATTCATCATCTGATTATCTTTGGTGCATTGATCCTTTAGATGGAACAACAAATTTTGCACATGGCTATCCTTCCTTTGCAGTATCTGTCGGAGTTTTATTTCGGGGAAATCCTGCTGCTGCAGCCGTGGTAGAGTTTGTTGGGGGTCCTATGTGCTGGAACACTCGCATATTTACTGCAACTGCTGGTGGGGGAGCATTCTGTAATGGCCAAAAGATTAATGTGAGTCAAACTAGCCAGGTGGAACGATCTCTTCTAGTTACAGGATTTGGATACGAACACGATGATCCATGGGCTACAAATATGGATTTATTTAAAGAATTCACAGATGTCAGCAGGGGAGTAAGAAGGCTCGGTGCAGCAGCAGTCGACATGAGCCATGTAGCTCTAGGAATTGTAGAAGCATATTGGGAGTATCGCCTGAAGCCATGGGATATGGCTGCAGGTGTTTTGATAGTTGAAGAAGCAGGTGGAGCAGTGACTTGCATGGATGGTGGAAAGTTCAGTGTCTTTGATAGATCTGTTTTGGTTTCTAATGGTGTTGTACATGACAAGCTTTTGGAGAAAATTGGTTGTGCAACAGAAAAACTAAAAAGCAAAGGAATTGATTTCTCATTGTGTTATCACTTCTCAAGTCTCCAAGCAATTTTTGCTTTGAGAGTTTGA 1122 43.49 MAISIAFSTNTHFPFSTICRSISSLSPSVDVLFNARRDCNRGFPLIRTLDTKLAKTRAALSEISYRKQYPKVGAKSIGPIPPAQLIQVVENAAKTGAEVVMDAVNKPRNIEYKGLADLVTETDKMSEAAILEVVRKNFRDHLILGEEGGVIGDSSSDYLWCIDPLDGTTNFAHGYPSFAVSVGVLFRGNPAAAAVVEFVGGPMCWNTRIFTATAGGGAFCNGQKINVSQTSQVERSLLVTGFGYEHDDPWATNMDLFKEFTDVSRGVRRLGAAAVDMSHVALGIVEAYWEYRLKPWDMAAGVLIVEEAGGAVTCMDGGKFSVFDRSVLVSNGVVHDKLLEKIGCATEKLKSKGIDFSLCYHFSSLQAIFALRV 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15841871 15849869 - CcPI632755_01g011150.1 Cco01g1115 169977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1115 373 ProSitePatterns Inositol monophosphatase family signature 2. 296 310 IPR020550 GO:0046854(InterPro)
Cco01g1115 373 PRINTS Inositol monophosphatase superfamily signature 117 137 IPR000760 -
Cco01g1115 373 PRINTS Inositol monophosphatase superfamily signature 293 317 IPR000760 -
Cco01g1115 373 PRINTS Inositol monophosphatase superfamily signature 160 176 IPR000760 -
Cco01g1115 373 PRINTS Inositol monophosphatase superfamily signature 139 155 IPR000760 -
Cco01g1115 373 PRINTS Inositol monophosphatase superfamily signature 215 238 IPR000760 -
Cco01g1115 373 PRINTS Inositol monophosphatase superfamily signature 262 283 IPR000760 -
Cco01g1115 373 ProSitePatterns Inositol monophosphatase family signature 1. 160 173 IPR020583 -
Cco01g1115 373 Pfam Inositol monophosphatase family 84 342 IPR000760 -
Cco01g1115 373 FunFam Inositol-1-monophosphatase 82 225 - -
Cco01g1115 373 Gene3D - 226 349 - -
Cco01g1115 373 PANTHER INOSITOL MONOPHOSPHATASE 84 344 - GO:0006020(PANTHER)|GO:0007165(PANTHER)|GO:0008934(PANTHER)|GO:0046855(PANTHER)
Cco01g1115 373 Gene3D - 83 225 - -
Cco01g1115 373 SUPERFAMILY Carbohydrate phosphatase 84 342 - -
Cco01g1115 373 FunFam Inositol-1-monophosphatase 226 355 - -
Cco01g1115 373 CDD IMPase 85 331 IPR033942 GO:0008934(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1115 Cco-Chr1:15841871 Cco01g1136 Cco-Chr1:16543642 1.00E-33 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1115 K01092 - csv:101218450 670.618