Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1164 ATGGCTGCTGGTGGTGATTTCTTGCCCCCCTTGGTTATGCTGGTTGTCCAATTCCTATATGCAGGTTTGAATATTACATCAAAGTTAGCCATGGAGTTTGGGATGAATCCACTGGTTCTAGTTGCTTACAGGCAGATGTTTGCTACCATAGCCATAGCTCCTTGTGCTTACTGGTTTGAGAGAAAAGGGAGACCCAAGATTACAAAGCCTATCCTGTTTCAGATTCTACTTTGTTCCTTAACTGGGGCAACAGCAAACCAAGTCTTTTACTACGTTGGGTTGAAATATTCAACCCCAACCATCGCATGCGCATTGACCAATGTTCTGCCTGCTGCAACTTTTGTCCTCGCTGTTCTTTTCAGACAAGAATCTGTGGGGATCAAAACAAGCCCAGGTGCAGCTAAGGTGATGGGGACTGTTGTATGTGTCGGAGGGGCAATGTTGCTGTCGTTCTACCGTGGACAAACAATCCAGCTTGGTGAATCTGGTATTCATTGGAAGTATGCCGAGTTAATGAGGGGGGGAAGCTCAACCAACCAAGGCAGCAGCATCTGGGGCTCCCTCTGCTTGATCATAAGCTCTGTCGCTTGGGCGGCTTGGTTTGTCATCCAAGCGAGAGTGAATGAGAAGTTTCCAGCACCCTACACGAGCACAGCTCTCATGACTTTCATGGCAACCATTCAATGTGGAGCAATTGCAGTTGGCGTTGAGCACAAGATGGCTGCAGCTTGGTCATTGAAAAGTTCAATCAGGCTTGTTGGCGCTCTCTATGCGGGAGTGGCGTGCTCTGGGGTGGCATTTTGCCTAACCTCCTGGAGCATCCAAAAGAAAGGTCCTCTCTATGCCTCAGTTTTCAGCCCCTTCTTGCTCGTTATTGTCGCTATCTTCAGCTGGGCCTTTTTTCAAGAAAAATTATATGTCGGAACTGTTGTAGGGTCATTGTTGATTGTTGTTGGGCTATACGCTGTCCTATGGGGAAAGACCAAGGAGGTGAAACTACAACAACATATCGAAATGGTGGCGGCAGCAGAGGCAAAGCTAGATGACTGTAATAACAGAGACTTAGAAGAACAGTCCTATGTGGTTTCAAATGCCACTATTCTCCATAAAATGCTCTTACTAGAGCCAGGACTCTGTGCTTACAATTCCATCGACGGTCTAGGAATTGTGCACTATTGTACTGCTTGCATAGCTATAGAGTTGATACTGCGACCGAAATTTAAATACAGGCATGATGAGAGCACCAGTCCGGCTTCAATATGTGAGCCAGTTCAACGATTCAGGGTAGTGGGTACTAGAACATTGGATTCAGCTAAATGA 1320 46.52 MAAGGDFLPPLVMLVVQFLYAGLNITSKLAMEFGMNPLVLVAYRQMFATIAIAPCAYWFERKGRPKITKPILFQILLCSLTGATANQVFYYVGLKYSTPTIACALTNVLPAATFVLAVLFRQESVGIKTSPGAAKVMGTVVCVGGAMLLSFYRGQTIQLGESGIHWKYAELMRGGSSTNQGSSIWGSLCLIISSVAWAAWFVIQARVNEKFPAPYTSTALMTFMATIQCGAIAVGVEHKMAAAWSLKSSIRLVGALYAGVACSGVAFCLTSWSIQKKGPLYASVFSPFLLVIVAIFSWAFFQEKLYVGTVVGSLLIVVGLYAVLWGKTKEVKLQQHIEMVAAAEAKLDDCNNRDLEEQSYVVSNATILHKMLLLEPGLCAYNSIDGLGIVHYCTACIAIELILRPKFKYRHDESTSPASICEPVQRFRVVGTRTLDSAK 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17277539 17281430 + CcPI632755_01g011640.1 Cco01g1164 170026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1164 439 SUPERFAMILY Multidrug resistance efflux transporter EmrE 233 328 - -
Cco01g1164 439 PANTHER WAT1-RELATED PROTEIN 11 344 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cco01g1164 439 Pfam EamA-like transporter family 185 324 IPR000620 GO:0016020(InterPro)
Cco01g1164 439 Pfam EamA-like transporter family 11 150 IPR000620 GO:0016020(InterPro)
Cco01g1164 439 Coils Coil 333 353 - -
Cco01g1164 439 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 152 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1164 Cco-Chr1:17277539 Cco02g1601 Cco-Chr2:28650030 3.50E-118 dispersed
Cco01g1164 Cco-Chr1:17277539 Cco11g1620 Cco-Chr11:29020257 2.60E-57 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1164 - - - 0.0