Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1185 ATGGACTCTGGTGATGTTGAGCAATCCTTGCTTCCTAAGCTCTCCGATTCTGATAAGAGGAAATCTCTCCAGAGAAGAAAATCTAACCGTCATGGTAGTTTTTCACATTCAGTAGAAAATAATAATCAACCACAAAATTATGATGTAATAGATCAACGAATTGCTGTTTCACAAGTTAGTTTTAGGAAAGTATTTGTTCTTCTCGCGACTTATTTGGGAGGGGGCACGTTTTGTTTTTTCCTTGTTCGGGATCAGATCACTGGCAAGAAAACAAATGGGATTGTTGATGCCATTTACTTTTGTGTTGTAACAATGACCACGGTTGGGTATGGTGATCTTGTTCCTAACAGCATAGTTGCAAAACTACTTGCATGTGCTTATGTCTTCACTGGAATGACTCTTGGTGGGATGATCCTTAGCAAGGCAGCCGATTACATTGTGGAAAAGCAGGAAATTCTTCTGGTTAAGGCCATGTACATGAGGAAAAAGATCAGCTCCAGCGAGATCCTTCAGGAATCTGAGGCTCACAAATTGAAATACAAATTCATTATGACTGGAATCCTCCTTTGGACTCTTGTCTTTGTTGGAACTCTTTTCTTGACTGTGGTTGAGAAGCTAGAGTTCATAGATGCCTTTTATTGCGTTTGTTCCACTATCACGACTCTTGGATATGGGGATGAGAGCTTCTCTACAACAGCTGGTCGTGTTTTTGCTGTCATTTGGATAATGAGCAGTACCATCTGCTTAGCACAGTTCTTTCTGTACCTTGCAGAATTACACACAGAAAGGAGACAAGAATCACTGGTAAATTGGGTTCTCAGCCGAAGCCTCACGTACTCGGATCTTGAAGAAGCAGACCTTGATCATGATAAAGTAGTAAGCGCTGCAGAATTTGTTATATATAAGCTGAAGGAAATGGGGAAGATCAATCAGGAAGACGTTTCTCCCATACTTGAAACTTTTAAGAAGCTTGACATTGATCAATCAGGAAGTTTAACAGAAGCTGATATAGTAACCTCATCGTCGTTGGCTTAA 1035 40.39 MDSGDVEQSLLPKLSDSDKRKSLQRRKSNRHGSFSHSVENNNQPQNYDVIDQRIAVSQVSFRKVFVLLATYLGGGTFCFFLVRDQITGKKTNGIVDAIYFCVVTMTTVGYGDLVPNSIVAKLLACAYVFTGMTLGGMILSKAADYIVEKQEILLVKAMYMRKKISSSEILQESEAHKLKYKFIMTGILLWTLVFVGTLFLTVVEKLEFIDAFYCVCSTITTLGYGDESFSTTAGRVFAVIWIMSSTICLAQFFLYLAELHTERRQESLVNWVLSRSLTYSDLEEADLDHDKVVSAAEFVIYKLKEMGKINQEDVSPILETFKKLDIDQSGSLTEADIVTSSSLA 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17517063 17518241 + CcPI632755_01g011850.1 Cco01g1185 170047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1185 344 Gene3D - 156 272 - -
Cco01g1185 344 SUPERFAMILY Voltage-gated potassium channels 177 275 - -
Cco01g1185 344 SUPERFAMILY Voltage-gated potassium channels 57 161 - -
Cco01g1185 344 ProSitePatterns EF-hand calcium-binding domain. 325 337 IPR018247 -
Cco01g1185 344 PRINTS Two pore domain K+ channel signature 220 229 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Cco01g1185 344 PRINTS Two pore domain K+ channel signature 103 131 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Cco01g1185 344 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 60 285 IPR003280 GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(InterPro)|GO:0071805(PANTHER)
Cco01g1185 344 FunFam Calcium-activated outward-rectifying potassium channel 1 58 153 - -
Cco01g1185 344 SUPERFAMILY EF-hand 271 338 IPR011992 -
Cco01g1185 344 Gene3D - 56 152 - -
Cco01g1185 344 MobiDBLite consensus disorder prediction 1 44 - -
Cco01g1185 344 Gene3D - 281 342 - -
Cco01g1185 344 Pfam Ion channel 67 147 IPR013099 -
Cco01g1185 344 Pfam Ion channel 189 259 IPR013099 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1185 Cco-Chr1:17517063 Cco09g2323 Cco-Chr9:37433552 3.00E-93 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1185 K05389 - csv:101214791 603.208