Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1229 ATGGCCTCAAAGAGTTCGAAGCCTTCTGTAAAGCAACCTAAGGGGATAACTGGCGTTCAAGCTACGGATTCAGGTGATCTAAAGTCCTTACCTTCACAGACTTCATTGGGAACCAAAATTGGTTCTGTTATCTCTGGAGATGTATTGAACTCTACACAGAAATCCTTGAATCAGTCTACTTTGATTGATTCATCAAAGAGCAAATCCTCAAGTTTAAATCCTAAAGAGTCTACCGAGTCTTGTAATCAGAAAGTCAAAGAAAATTCCTCAAAGTCTGGCTCTAAGATGTTGACAGAAGGAGATCCTGCTCTTAGCGGGACTCGGGGCTTAGCAGAGGACTCTATAGATCCTGAGAAGAAAACATCGGAATGTGGGAGTGGGAAGGATAGTTCTGTTTCTGCCAAAGTCAGTGATGGAACAAACAGTATTGCCAAGACTAGTGGAAGTGCGAAAATTAGCGACCGTGTTGAGATGGTTGAGAGTGGCAAGAGCAGCATGTGTCGAGGAAGCACTAGCAGCGACATCAGTGACGAAAGCACCTGTAGCAGCTTTAGTAGTAGTATCAGTAAGCCTCACAAAGCAAATGACTTGAGATGGGAGGCCATCCAAGCTGTACGTGCAAGGGACGGGATATTGGGATTAGGTCATTTTAGACTATTGAAGAGACTGGGATGTGGGGATATCGGAAGCGTCTACTTGTCGGAGTTGAGTGGTACTAAATGTTATTTTGCTATGAAGGTCATGGACAAAGGGTCTCTAGCAAGCCGAAAGAAGTTGCTTCGAGCTCAGACCGAAAGAGAAATATTGCAGTCTCTTGATCATCCATTCCTTCCTACATTATATACTCATTTTGAGACTGATAAGTTCTCATGCTTGGTGATGGAGTTCTGCCCTGGGGGAGACTTGCACACTCTAAGGCAGAGGCAGCCAGGGAAGCATTTTCCCGAGCAGGCGGTGAAATTTTATGTAGCAGAGGTTCTCCTAGCACTTGAGTATCTTCACATGCTTGGGATTGTATACCGGGACCTTAAGCCTGAGAATGTTCTTGTGAGGGAAGATGGACACATAATGCTTTCGGACTTCGATCTTTCATTAAGATGTGCAGTTAGTCCAACATTAGTGAAGGGTTCATGTTCTGAGTCTGAACCCTTGAGAAAGAATTCAGCTTATTGTGTTCAACCGGCTTGTATCGAACCTTCCTGCATCCAGCCATCCTGTGTAGTTCCTACAACATGCTTCTCTCCCCGACTTTTCTCTAGCAAATCAAAGAAGGATAGAAAACCCAAGACTGAAATAGGAAACCAGGTAACACCATTGCCAGAGCTCATTGCAGAGCCTACGGAGGCGAGATCAATGTCATTTGTTGGTACACACGAGTATTTGGCACCGGAGATCATTAAAGGTGAAGGTCATGGAAGTGCTGTTGACTGGTGGACTTTTGGAATCTTTCTATACGAACTGTTGTTTGGTAAAACTCCTTTTAAGGGATCTGGGAATCGAGCCACGTTGTTCAACGTTGTTGGTCAGCCTTTGCGGTTTCCTGAATCACCAGTTGTCAGTTTTGCTGCAAGGGATCTCATCAGGGGATTGCTTGTCAAGGAACCACAACATAGATTAGCTTACAAACGAGGGGCAACTGAGATCAAGCAACATCCCTTCTTTGAAGGTGTCAACTGGGCATTGATACGTTGCGCTTCGCCACCAGAAGTACCAAAGCCTGTTGAGATTGAGAGGATACCCTCACCAGCACCTCCAGCGAGTGGAAAAGCTGTAATGGCTAGACCTGGTCCCGATTCCAAATCGTCTGATAATTATCTCGAGTTTGATTTCTTTTAG 1836 44.93 MASKSSKPSVKQPKGITGVQATDSGDLKSLPSQTSLGTKIGSVISGDVLNSTQKSLNQSTLIDSSKSKSSSLNPKESTESCNQKVKENSSKSGSKMLTEGDPALSGTRGLAEDSIDPEKKTSECGSGKDSSVSAKVSDGTNSIAKTSGSAKISDRVEMVESGKSSMCRGSTSSDISDESTCSSFSSSISKPHKANDLRWEAIQAVRARDGILGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKGSCSESEPLRKNSAYCVQPACIEPSCIQPSCVVPTTCFSPRLFSSKSKKDRKPKTEIGNQVTPLPELIAEPTEARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCASPPEVPKPVEIERIPSPAPPASGKAVMARPGPDSKSSDNYLEFDFF 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18768052 18770353 - CcPI632755_01g012290.1 Cco01g1229 170091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1229 611 MobiDBLite consensus disorder prediction 56 174 - -
Cco01g1229 611 MobiDBLite consensus disorder prediction 56 96 - -
Cco01g1229 611 PANTHER FLIPPASE KINASE 1-RELATED 84 574 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cco01g1229 611 Gene3D Transferase(Phosphotransferase) domain 1 448 572 - -
Cco01g1229 611 Gene3D Transferase(Phosphotransferase) domain 1 301 369 - -
Cco01g1229 611 Gene3D Phosphorylase Kinase; domain 1 215 300 - -
Cco01g1229 611 FunFam Serine/threonine-protein kinase AGC1-7 447 572 - -
Cco01g1229 611 MobiDBLite consensus disorder prediction 579 604 - -
Cco01g1229 611 CDD STKc_phototropin_like 216 577 - -
Cco01g1229 611 FunFam Serine/threonine-protein kinase D6PK-like 215 300 - -
Cco01g1229 611 MobiDBLite consensus disorder prediction 1 38 - -
Cco01g1229 611 FunFam serine/threonine-protein kinase D6PK-like 301 368 - -
Cco01g1229 611 Pfam Protein kinase domain 218 367 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g1229 611 Pfam Protein kinase domain 451 554 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g1229 611 SMART serkin_6 217 554 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g1229 611 ProSitePatterns Serine/Threonine protein kinases active-site signature. 338 350 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g1229 611 ProSiteProfiles Protein kinase domain profile. 217 554 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g1229 611 MobiDBLite consensus disorder prediction 126 149 - -
Cco01g1229 611 SUPERFAMILY Protein kinase-like (PK-like) 193 582 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1229 Cco-Chr1:18768052 Cco04g0191 Cco-Chr4:4495443 3.00E-152 dispersed
Cco03g0807 Cco-Chr3:8685812 Cco01g1229 Cco-Chr1:18768052 2.60E-103 transposed
Cco05g0014 Cco-Chr5:133185 Cco01g1229 Cco-Chr1:18768052 9.40E-190 transposed
Cco10g1370 Cco-Chr10:26715631 Cco01g1229 Cco-Chr1:18768052 8.90E-199 transposed
Cco01g1229 Cco-Chr1:18768052 Cco04g1902 Cco-Chr4:33532347 1.60E-225 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86517 PF00069 Pkinase 9.50E-37 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1229 K08286 - csv:101213662 1095.49