Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1326 ATGAGGCACAGTGGTTGCGTTGCCAAGAGAATTCTTTACACTTCTTTATGTTATATCTTTCTGATGTCCATGAGCTCGGCTTTCAGGAACATACCCACTTTTGGAAACGAATCAGATTACTTGGCTCTACTTGACTTGAAAAGAGGAGTACTCAATGACCCACTCAAAATCATGAGCTCTTGGAATGATTCCATGCATTTTTGTGACTGGGTTGGTGTTACTTGCAGTACCACCATTAGAAGAGTAATTGGGTTGAACTTGGAAGCTCGACAACTGACTGGTTCCATACCATCTTCTTTAGGAAATCTTACTCATCTCACTGAAATCAGATTGGGAGACAACAACTTCCATGGCCCAATAGCCCAAGAGTTTGGTAAATTATTACGACTGCGCCATCTCAATTTATCATTCAATAACTTTGACGGTGAGATTGCAACGAACATAAGTCATTGTACTGAGCTGCTTGTCTTGGAGCTGAGTTTTAATGAGCTTGTTGGTCAGATTCCACATCAGTTCTTTACGTTAAGCAAGTTGGAACGACTTGGGTTTGGTGGTAACAATCTGGTCGGAACCATCCCACCTTGGATAGGAAATTTTTCTTCACTATTTCGTTTGTCATTTGCACAGAACAATTTTCAAGGAAGTATTCCTAGTGAACTAGGACGCCTATCTAGATTGGAAATGTTCACAGTTTATGGAAACTATTTGACAGGTATAGTGCCACCATCTATCTATAATATAACTTCTCTTACTTACTTTTCCCTTACTCAAAATCGACTCCAAGGAACTCTACCACCAGATGTGGGATTTACTCTCCCAAATCTTCATGTCTTTGCTGGTGGTGCCAATAATTTTGGAGGGCCTATTCCCACATCCTTGGCTAATATCTCCGGTCTTCAGATCTTAGATTTTGCTGAGAACAATCTCATTGGACCTCTTCCTCATGACTTGGGAAACTTAAAAGAATTGGTGAGGTTCAATTTTGATGACAACAGACTTGGAAGTGGGAAAGTTGATGACTTAAATTTAATCATGTCTTTGACTAATTGTACTAGTCTAAGCGTTTTGGGTCTTTCTGGGAATCGCTTTGGAGGAGCATTACCTCTATCAATGACCAACCTTTCAAACCAGCTGACAATACTAACCTTGGGTAGAAATTTGTTAAGTGGAGGCATTCCTGTGGGGATTGGAAACTTGATTAACTTACAAGTTCTTGGAGTAGAAGGTAACAATCTGAATGGTAGTGTCCCTTCCAATATTGGGAAGCTTCATAAGTTGTCTGTACTTGATTTGAACAATAACAAGTTAGCTGGAACAATTCCATCCTCCATTGGTAACTTATCTTCAGTGACCAAGCTTTTCATGGAGGACAATAGGCTAGAGGGAAGTATACCACCAAGCTTGGGACAATGCAAAAGCCTCCAAGCCCTTGACCTATCTGGTAACAACCTAAGTGGGACCATACCAAAGGAAGTTCTCAGTCTCTCTTCCCTTTCAATCTATTTGGCCTTAAATCACAACACACTTACTGGACCATTGCCACATGAAGTTGGTGATTTAGTTGGTTTAACATTGTTAGATGTATCACAGAATAAATTATCAGGTGATATTCCTAGCGACCTTGGTAAATGTATTAGCATGGTACACTTGTATTTGGGAGGTAACCAATTTGAGGGAACAATTCCTCAGTCTTTGAAAGCCTTGAAAGGTCTAGAAGAACTAAATCTCTCAAGTAACAACTTGTCTGGGCCAATTCCTCAATTTCTTGGCAAGCTTTTTTCACTCAAATTTCTTAATCTATCCTACAATAATTTTAAGGGAAAAGTGCCCAAAGAAGGAATTTTTTCCAATTCAACCATGTTTTCCATCCTTGGGAACAATAATCTATGTGATGGTTTGCAGGAATTACATCTACCTTTGTGCACATCTAACAGAACGCATTTGTCCAACAAGCTTGTAACACCAAAAGTGTTCATTCCGGTAGTATCTACCCTCACATTCCTAGTTATTCTTTTGAGCATCCTATTTGTCTGTTATATGATGAAGAAGTCAAGGAAAAATGTTTTATCTTCATCATGCTCTGTTGATTTATTATCACAAATTTCTTACTTAGAGCTCAATAGATCAACAAATGGGTTTTCTGTAGACAATTTGATTGGTTCAGGTAGTTTTGGTTCCGTGTATAAAGGTGTTTTGAATGATAAATCAATTGTCGCTGTTAAGGTTCTTAACCTTCGACAACATGGTGCTTCCAAGAGTTTTGTTGATGAATGTAAAGCTCTCACGAGCATACGACATCGAAATCTCCTTAAGATCATAACTTCTTGCTCGAGTACGGATGAAAAAGATAATGAGTTCAAAGCTATAGTATTTGATTTCATGTCCAATGGAAACCTGGACGGTTGGCTTCACCCTACACATATCGAGGAGAATAAAAGCAAATTGAGCTTTATTCAAAGATTGAATATTGCTATTGATGTTGCCAATGCATTAGATTATCTCCATAATCATTGTGAAACACCCATCGTTCATTGTGATCTAAAGCCTAGCAATGTGTTGTTGGATGATGATATGGTAGCCCATGTTGGGGACTTCGGGTTAGCTAGATTCATCTTTGAAGGATCAGATCAATCTTCTTATAAACAAACCATGTCAATTGCACTTAAGGGTTCTATTGGATATATTCCTCCAGAGTACGGAACCGGTGGCAACATTTCCATTGAAGGAGATATCTTTAGCTATGGAATTTTACTATTGGAGATGTTCACTGGAAAAAGACCCACTGATAACTTGTTTAGTGATGGCGTGGATATTCATCTATTCACGGCAATGGCATTGCCTCATGGTGTCTTGGACATAACTGATCCTTCTTTGCTATCTGAAGGGTCATGCCAACAAGAAGAAGAGAATGAAGAAAAATTACAAACAATAGCAATAATGAGTGAGGAAGATCATACAGAAATTGAGCAAAGAAGGATGGAAGAACACCTAGTCTCGATAATAAGAACTGGCCTAAGAAGGCAAGCTAACATTGTCCAACAAGATTTTCAAGAACTTGCAGCTATATATTGCTTAACCATTTTGGTTACATCTTGA 3096 38.66 MRHSGCVAKRILYTSLCYIFLMSMSSAFRNIPTFGNESDYLALLDLKRGVLNDPLKIMSSWNDSMHFCDWVGVTCSTTIRRVIGLNLEARQLTGSIPSSLGNLTHLTEIRLGDNNFHGPIAQEFGKLLRLRHLNLSFNNFDGEIATNISHCTELLVLELSFNELVGQIPHQFFTLSKLERLGFGGNNLVGTIPPWIGNFSSLFRLSFAQNNFQGSIPSELGRLSRLEMFTVYGNYLTGIVPPSIYNITSLTYFSLTQNRLQGTLPPDVGFTLPNLHVFAGGANNFGGPIPTSLANISGLQILDFAENNLIGPLPHDLGNLKELVRFNFDDNRLGSGKVDDLNLIMSLTNCTSLSVLGLSGNRFGGALPLSMTNLSNQLTILTLGRNLLSGGIPVGIGNLINLQVLGVEGNNLNGSVPSNIGKLHKLSVLDLNNNKLAGTIPSSIGNLSSVTKLFMEDNRLEGSIPPSLGQCKSLQALDLSGNNLSGTIPKEVLSLSSLSIYLALNHNTLTGPLPHEVGDLVGLTLLDVSQNKLSGDIPSDLGKCISMVHLYLGGNQFEGTIPQSLKALKGLEELNLSSNNLSGPIPQFLGKLFSLKFLNLSYNNFKGKVPKEGIFSNSTMFSILGNNNLCDGLQELHLPLCTSNRTHLSNKLVTPKVFIPVVSTLTFLVILLSILFVCYMMKKSRKNVLSSSCSVDLLSQISYLELNRSTNGFSVDNLIGSGSFGSVYKGVLNDKSIVAVKVLNLRQHGASKSFVDECKALTSIRHRNLLKIITSCSSTDEKDNEFKAIVFDFMSNGNLDGWLHPTHIEENKSKLSFIQRLNIAIDVANALDYLHNHCETPIVHCDLKPSNVLLDDDMVAHVGDFGLARFIFEGSDQSSYKQTMSIALKGSIGYIPPEYGTGGNISIEGDIFSYGILLLEMFTGKRPTDNLFSDGVDIHLFTAMALPHGVLDITDPSLLSEGSCQQEEENEEKLQTIAIMSEEDHTEIEQRRMEEHLVSIIRTGLRRQANIVQQDFQELAAIYCLTILVTS 1031
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21710545 21713907 - CcPI632755_01g013260.1 Cco01g1326 170188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1326 1031 Gene3D Transferase(Phosphotransferase) domain 1 794 1014 - -
Cco01g1326 1031 FunFam LRR receptor-like serine/threonine-protein kinase EFR 342 647 - -
Cco01g1326 1031 SUPERFAMILY RNI-like 85 494 - -
Cco01g1326 1031 PRINTS Leucine-rich repeat signature 568 581 - -
Cco01g1326 1031 PRINTS Leucine-rich repeat signature 474 487 - -
Cco01g1326 1031 ProSitePatterns Serine/Threonine protein kinases active-site signature. 842 854 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g1326 1031 Pfam Leucine rich repeat N-terminal domain 37 76 IPR013210 -
Cco01g1326 1031 Gene3D Ribonuclease Inhibitor 340 649 IPR032675 -
Cco01g1326 1031 FunFam Leucine-rich repeat receptor-like protein kinase TDR 75 341 - -
Cco01g1326 1031 Gene3D Ribonuclease Inhibitor 36 194 IPR032675 -
Cco01g1326 1031 SUPERFAMILY Protein kinase-like (PK-like) 685 937 IPR011009 -
Cco01g1326 1031 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 794 1011 - -
Cco01g1326 1031 PANTHER OS04G0122200 PROTEIN 53 993 IPR051809 -
Cco01g1326 1031 SUPERFAMILY L domain-like 376 631 - -
Cco01g1326 1031 Gene3D Ribonuclease Inhibitor 204 339 IPR032675 -
Cco01g1326 1031 SMART LRR_typ_2 568 591 IPR003591 -
Cco01g1326 1031 SMART LRR_typ_2 447 471 IPR003591 -
Cco01g1326 1031 SMART LRR_typ_2 399 422 IPR003591 -
Cco01g1326 1031 SMART LRR_typ_2 423 446 IPR003591 -
Cco01g1326 1031 SMART LRR_typ_2 592 617 IPR003591 -
Cco01g1326 1031 SMART LRR_typ_2 520 544 IPR003591 -
Cco01g1326 1031 SMART LRR_typ_2 127 151 IPR003591 -
Cco01g1326 1031 SMART LRR_typ_2 175 199 IPR003591 -
Cco01g1326 1031 SMART LRR_typ_2 472 495 IPR003591 -
Cco01g1326 1031 Pfam Leucine rich repeat 425 484 IPR001611 GO:0005515(InterPro)
Cco01g1326 1031 Pfam Leucine rich repeat 548 605 IPR001611 GO:0005515(InterPro)
Cco01g1326 1031 Pfam Leucine Rich Repeat 523 544 IPR001611 GO:0005515(InterPro)
Cco01g1326 1031 Pfam Leucine Rich Repeat 299 320 IPR001611 GO:0005515(InterPro)
Cco01g1326 1031 Pfam Leucine Rich Repeat 177 199 IPR001611 GO:0005515(InterPro)
Cco01g1326 1031 Pfam Leucine Rich Repeat 129 151 IPR001611 GO:0005515(InterPro)
Cco01g1326 1031 ProSiteProfiles Protein kinase domain profile. 713 997 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g1326 1031 SMART serkin_6 713 1017 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g1326 1031 Gene3D Phosphorylase Kinase; domain 1 676 793 - -
Cco01g1326 1031 FunFam LRR receptor-like serine/threonine-protein kinase EFR 683 793 - -
Cco01g1326 1031 ProSitePatterns Protein kinases ATP-binding region signature. 719 741 IPR017441 GO:0005524(InterPro)
Cco01g1326 1031 Pfam Protein tyrosine and serine/threonine kinase 715 931 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1326 Cco-Chr1:21710545 Cco10g2179 Cco-Chr10:34934704 8.80E-173 dispersed
Cco02g0640 Cco-Chr2:6354961 Cco01g1326 Cco-Chr1:21710545 6.50E-07 transposed
Cco01g1326 Cco-Chr1:21710545 Cco10g0777 Cco-Chr10:13171002 1.90E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86519 PF00069 Pkinase 1.60E-39 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1326 - - - 0.0