Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1365 ATGGTTTATGTTAACCCCTTTGAAGATATGGGTTTGAGAAATCATATGGCAGATGATAACATCTTTTGTCTTCAATCCCCAACTTTCATAGAATGGCTTAAACCACACAACCCTTCTTCTCCTTCTCCCTCCGTCTCTCTCTCGTCTTCGTCTTCGTCTATCTCCGACCGAGATTTAATCTCTCAGACGAGTGTCCAATGCGTTAATACAGGGTTAGTTCCTGATCAACAATATGAATTTTTCGTGTCGTCCCGATGCCTGCCTTTGTTCACTGAGACGGAGGCCTTGCCGAAGAACGACAAAGAATTAGGAGCTCGAGCTCAAGATCATGAAAGGAAATATTTGGGAATTAAAGAGGAGAATGAAGATATGGAGAAAGTTGAAGTGGGTTTGCACATTGGGCTTCCAAATGTTGGTGATGGGAAGAACTTGAATGTTTGTGTAAAGAAAGAAGAAATAAGCTGCCTCAAGAAAAGCTTCTCTAATTTTAACAATCAAGGAAGGTTTTGGATCCCAACACAGGCTCAGATCCTTGTTGGTCCTATGCAATTTACTTGCTCCATCTGCAACAAGTCATTTAATAGATACAATAACATGCAGATGCACATGTGGGGGCATGGATCTGAGTACAGAAAAGGGCCAGAATCTCTTAGAGGAACACAGCCAGCAGCAATGCTAAGGCTTCCATGTTATTGCTGTGCTCAAGGTTGCAAGAACAACATTAACCATCCAAGAGCCAAGCCATTGAAAGACTTCAGAACCCTTCAAACCCATTACAAAAGAAAGCATGGTTCCAAGCCATTTATGTGTAGAAAATGTGGCAAAACTTTGGCTGTTAAAGGAGATTGGAGAACCCATGAAAAAAATTGTGTAACAAAACATTCTCCGACTGTTGGATCGTGCGAGGAGAAATTATTTGGGAGATCGGAACAATGTGGTTGCCATGCATCCAGGAGTGTTAGGATGAGACAATTTTGCATTGTGATGGTCACGTTGAATAGTCTTTCTGAGAAGCTCAAGCAGTAA 1026 41.72 MVYVNPFEDMGLRNHMADDNIFCLQSPTFIEWLKPHNPSSPSPSVSLSSSSSSISDRDLISQTSVQCVNTGLVPDQQYEFFVSSRCLPLFTETEALPKNDKELGARAQDHERKYLGIKEENEDMEKVEVGLHIGLPNVGDGKNLNVCVKKEEISCLKKSFSNFNNQGRFWIPTQAQILVGPMQFTCSICNKSFNRYNNMQMHMWGHGSEYRKGPESLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKPFMCRKCGKTLAVKGDWRTHEKNCVTKHSPTVGSCEEKLFGRSEQCGCHASRSVRMRQFCIVMVTLNSLSEKLKQ 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23128183 23130847 + CcPI632755_01g013650.1 Cco01g1365 170227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1365 341 PANTHER ZINC FINGER PROTEIN WIP2 27 292 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Cco01g1365 341 ProSiteProfiles Zinc finger C2H2 type domain profile. 184 211 IPR013087 -
Cco01g1365 341 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 267 290 - -
Cco01g1365 341 SUPERFAMILY beta-beta-alpha zinc fingers 170 207 IPR036236 -
Cco01g1365 341 Coils Coil 107 127 - -
Cco01g1365 341 Gene3D Classic Zinc Finger 183 206 - -
Cco01g1365 341 ProSitePatterns Zinc finger C2H2 type domain signature. 186 206 IPR013087 -
Cco01g1365 341 SMART c2h2final6 231 263 IPR013087 -
Cco01g1365 341 SMART c2h2final6 184 206 IPR013087 -
Cco01g1365 341 SMART c2h2final6 268 294 IPR013087 -
Cco01g1365 341 SUPERFAMILY beta-beta-alpha zinc fingers 253 299 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1365 Cco-Chr1:23128183 Cco10g1704 Cco-Chr10:30590448 6.90E-66 dispersed
Cco01g1365 Cco-Chr1:23128183 Cco02g2486 Cco-Chr2:37194600 3.10E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58621 None None None None Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1365 - - - 0.0