Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1369 ATGTCGGGCAGCGAATTACTCTTCTCTCTGCCCACCGCAATTTCCCTTCTCTTCTTCTCCTTCACGGCGGCCTTCACGATTTTCTCTTTCTCTCTTTACGTCCTCCGCCTTAACCCATGCTGCAATTGCTGTGTTTGCCGCAGCTATCTTTCTTCTTCATGGTCTTTCTCTTTCCCCAACTTATCAGATTGGTACACTCACCTTCTTTCCCTTTCCCCCACCGCCACCATCCACCTCCACGTCCTCTCCAACATCGTCACCGCCAACCCCGACAACGTCCAACACATCCTCAAATCCAACTTTCATAACTATCCCAAAGGAAAACCATTCTCTTCCATCCTCGGCGACCTTCTCGGTCACGGCATTTTCAATGTCGATGGTCATTCTTGGCGGTTCCAACGCAAGATGGCTAGCTTGGAACTCGGGAGCTTGTCGCTGCGGTCTCACGCTTTCGAGATTTTAACTACTCAGATTCAGACAAGGTTGGTTCCTGTGATGAAGGATGTTGGGGAAGTGGATTTGCAAGATGTGTTTAGGAGGTTTTCGTTTGATAATATTTGTAGATTTTCGTTTGGGTTGGATCCGGGGTGTTTGAGGTTGTGTTTGCCCATATCGGAGTTTGCGGTGGCGTTTGATTTGGCGTCGAGGTTATCGGCGGAAAGGGCTATGGCGGCGTCGCCGATTATGTGGAAGATTAAGAGGGTTTTGAGAGTGGGATCGGAGAGGAAGCTTGGGGAAGCTATTAAGATGGTGGATGGGTTAGCGATGGAAGTTATAAGGCAACGGAGGGAGATGGGGTTTTCACATAGGAATGATCTTCTCTCTAGATTCATGGCTTCTACCAACGATGATCGATATCTTAGAGACATTGTTGTTAGCTTTCTCCTCGCCGGTCGGGACACGGTGGCGTCGGCGTTGACTAGCTTATTCTGGCTACTTTCCCAAAACCCGGAAGTAGAGACTAAAATTATCTCCGAGTCAGACCGGATCATGGGACCGGACCGAGACACGGTACCTAGTTTTGACAATCTTAAGGACTTGCACTACCTCCAAGCAGCGGTCTACGAAAACATGCGTCTCTTTCCACCGGTTCAGTTCGATTCCAAGTTTGCCGAGGAAGACGACATCTTGCCGGACGGTACATTTGTCCAAAAGGGCACTAGGGTAACTTACCACCCCTACGCCATGGGCCGAATGGACCGGATTTGGGGACCCGATTGTCTCGAGTTCAAACCACAGAGGTGGCTCAAGAATGGCTACTTTGCGCCAGAAAACCCGTTTAAGTTCCCGGTTTTTCAAGCCGGTTTAAGGGTTTGTTTAGGTAAGGAGCTAGCCGTGATGGACGTGAAATGTGTTGCAGTGGTATTGATTCGGAAGTTTAAGATTCGGTTGGCAGGAGCCGATCGGGTTGCTCGGTTTGCTCCCGGTCTAACGGCTAGCTGGAGAGGTGGGTTACCAGTTCGAATTGAAGAAAGAACCACTTGTTAA 1488 49.53 MSGSELLFSLPTAISLLFFSFTAAFTIFSFSLYVLRLNPCCNCCVCRSYLSSSWSFSFPNLSDWYTHLLSLSPTATIHLHVLSNIVTANPDNVQHILKSNFHNYPKGKPFSSILGDLLGHGIFNVDGHSWRFQRKMASLELGSLSLRSHAFEILTTQIQTRLVPVMKDVGEVDLQDVFRRFSFDNICRFSFGLDPGCLRLCLPISEFAVAFDLASRLSAERAMAASPIMWKIKRVLRVGSERKLGEAIKMVDGLAMEVIRQRREMGFSHRNDLLSRFMASTNDDRYLRDIVVSFLLAGRDTVASALTSLFWLLSQNPEVETKIISESDRIMGPDRDTVPSFDNLKDLHYLQAAVYENMRLFPPVQFDSKFAEEDDILPDGTFVQKGTRVTYHPYAMGRMDRIWGPDCLEFKPQRWLKNGYFAPENPFKFPVFQAGLRVCLGKELAVMDVKCVAVVLIRKFKIRLAGADRVARFAPGLTASWRGGLPVRIEERTTC 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24052890 24055605 + CcPI632755_01g013690.1 Cco01g1369 170231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1369 495 Gene3D Cytochrome P450 57 494 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g1369 495 PRINTS E-class P450 group I signature 306 332 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g1369 495 PRINTS E-class P450 group I signature 429 439 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g1369 495 PRINTS E-class P450 group I signature 286 303 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g1369 495 PRINTS E-class P450 group I signature 439 462 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g1369 495 Pfam Cytochrome P450 73 465 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g1369 495 CDD CYP86A 73 485 - -
Cco01g1369 495 PANTHER CYTOCHROME P450 38 484 - -
Cco01g1369 495 PRINTS P450 superfamily signature 297 314 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g1369 495 PRINTS P450 superfamily signature 439 450 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g1369 495 PRINTS P450 superfamily signature 352 363 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g1369 495 PRINTS P450 superfamily signature 430 439 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco01g1369 495 SUPERFAMILY Cytochrome P450 55 492 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1369 Cco-Chr1:24052890 Cco10g1902 Cco-Chr10:32577676 4.80E-177 dispersed
Cco01g1369 Cco-Chr1:24052890 Cco09g0436 Cco-Chr9:3891241 3.10E-91 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1369 K20624 - csv:101207724 886.33