Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1380 ATGTTTGCTAAAAATCTCCACTTCTTCTTTTGGCTCTTACTTTCTCTTCTCATTCTTCACTCAACATCATCATCTATTTCTTCACAAGTGTATATAGTGTACTTAGGGCACAACCGTTTGAGTGATGATGCAACTTTGACCTCCAAATACCATCTTCATCTACTCTCAAAAGTGTTTGCAAGTGAAGAAGATGGTAAAAGAGCCATGTTGTATAGTTACAAGAAAAGTTTTTCGGGGTTCTCAGCAAAGCTTAATGCAAGCCAAGCAATAGCATTATCAAAGATGGAAGGAGTGATATCCGTATTCGAGAGTAAAACAATGCAACTTCACACAACAAGAAGTTGGGATTTCTTGGGCCTTCCGATAATTCCCTCATATACTAATAATATTAAACCACTATTTCCGCTTCGCCTTCCTAGCTATGGCGATCACGATGTTGTTGTTGGCATCTTCGATTCAGGTGTGTGGCCGGAATCTGAAAGTTTCAAGGAGAGTGAGGAGATGGGGAGACTTCCGTGCAATTGGAAAGGTAAATGTGTGAAAGGATACAGATTCAACCCGGCCTTAGCCTGTAACCGCAAGCTAATTGGCGCTCGCTACTACCTTAAAGGCTTCGAAGCCCAATACGGAGCCCTCAACACCACCGCCGGCAACCCCGAGTTCCGCTCCCCTCGAGACTTCTTAGGTCATGGAACTCACACCGCTTCCACTGCGGTGGGTGCGGTCGTACATAATGTCACCTTCACTACATCTTCATCACTGGCTAAAGGCATTGCCCGAGGTGGGGCTCCCTGGGCCAGGCTGGCAGTGTACAAAGTGTGTTGGGGAAAGGACTACGAGGGCAAGTGCACCGATGCCGACGTCATGGCCGCTTTCGACGATGCTTTGCACGACGGAGTGGACGTCATCTCCGCCTCGTTTGGAGAGACGCCGCCGTTGGCTCCGTTGTTTGAGTCGGCCTCGGCTATTGGCTCATTCCATGCGATGCAGCGGGGAGTGAGCGTGGTGTTCTCTGCTGGGAATGATGGACCCCACCCTTCCCTTGTTCAAAATGTGTCTCCTTGGAGTATTTGTGTTGCTGCTTCTACTATGGATCGAACTTTTCCCACTCCAATACTTGTTCAAAACCATTTCTCAATCATGGGGGAGAGCTTGATCACAAGAAATATAATAAACGTAAAGCTGGCAGATGCAATCAACTATTTCATAGATGGAATTTGTGAGAGAGACAACATAAGGAAAGGAGGGAAGTCAGGTAAAGGGAAAGTGGTAGTCTGTTTCTCAACCATTGGCCCAGTTTCCATAGGAACTGCACAAGAAGCAGTGAGAGCCATCAATGGCTCCGCTTTAATATTTGGTGCGCCCCCCACGACGGAGCTCCCAGATCTAGATCTCATCCCCACCGTTCGAATTGACATTGCTCAGGCGACTCAAATTCGAAACTTTCTTGCTGAATTACCCAGACTGCCGGCCGTCGAGATCGGCGTCGCGAGAAGTGTGATTGGGAAATCCGTAGCTCCTAGTGTGGCTTACTTTTCATCCAGAGGACCAAGCTCTATCTTACCTGACATTCTCAAGCCAGACATAAGTGCCCCAGGAGTGAACATATTGGCAGCATGGCCTCCGGAAACAGCTCCGACGGTGAGGCCAAGTGGAAGCGTTATTGAAGAAGAAGGTGTAAAATGGAATTTCCAGTCAGGGACTTCAATGTCATGTCCTCATATCTCTGGAGTAGTTGCCCTTATCAAATCTCTTCATCCCCATTGGTCACCTGCAGCCATTAGATCTGCCATCATCACCACAGCCACGAAGAGGGACTCTAGTGGGAATAGCATCCTAGCAGGCGGATCCATGAAACCATCAGACCCATTTGACGTTGGTGCAGGTCAAGTGAACCCCTTAAAGGCCATAAATCCAGGTCTAATCTACGACATCACAACCAGCGATTACATTAGTTTCCTATGCAATATTGGGTATACAGAACAACAAATCAAGATGCTAATTCTCAACCCTTCTCCTCAATTTTGTTGTCCTCCTCAATCCACTACTACCATTACTGCAAATCTTAATTATCCGTCAATTACACTTACAAATCTTGGCTCTACCACCACACTCAAAAGAATTGTCCGCAATGTATCGCTCAACAAAAACGCCATTTACTTTCTTAGGATTCTTCCTCCCAAGGGAGTCCGAGTACAAGTCTGGCCAAGAATCCTGCTTTTCTCTTGCTTTAGGCAACACGTTTCTTACTATATTACCATAACTCCGCTCAAGAAATCTCGAGGTAGATATGATTTTGGGGAGATTCAATGGTTTAATCGCTTCCATACTGTCACAAGTCCTCTCGTTGTACGTCTTGCCACTTCAACATAA 2373 46.44 MFAKNLHFFFWLLLSLLILHSTSSSISSQVYIVYLGHNRLSDDATLTSKYHLHLLSKVFASEEDGKRAMLYSYKKSFSGFSAKLNASQAIALSKMEGVISVFESKTMQLHTTRSWDFLGLPIIPSYTNNIKPLFPLRLPSYGDHDVVVGIFDSGVWPESESFKESEEMGRLPCNWKGKCVKGYRFNPALACNRKLIGARYYLKGFEAQYGALNTTAGNPEFRSPRDFLGHGTHTASTAVGAVVHNVTFTTSSSLAKGIARGGAPWARLAVYKVCWGKDYEGKCTDADVMAAFDDALHDGVDVISASFGETPPLAPLFESASAIGSFHAMQRGVSVVFSAGNDGPHPSLVQNVSPWSICVAASTMDRTFPTPILVQNHFSIMGESLITRNIINVKLADAINYFIDGICERDNIRKGGKSGKGKVVVCFSTIGPVSIGTAQEAVRAINGSALIFGAPPTTELPDLDLIPTVRIDIAQATQIRNFLAELPRLPAVEIGVARSVIGKSVAPSVAYFSSRGPSSILPDILKPDISAPGVNILAAWPPETAPTVRPSGSVIEEEGVKWNFQSGTSMSCPHISGVVALIKSLHPHWSPAAIRSAIITTATKRDSSGNSILAGGSMKPSDPFDVGAGQVNPLKAINPGLIYDITTSDYISFLCNIGYTEQQIKMLILNPSPQFCCPPQSTTTITANLNYPSITLTNLGSTTTLKRIVRNVSLNKNAIYFLRILPPKGVRVQVWPRILLFSCFRQHVSYYITITPLKKSRGRYDFGEIQWFNRFHTVTSPLVVRLATST 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24653082 24661833 + CcPI632755_01g013800.1 Cco01g1380 170242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1380 790 Gene3D - 654 787 - -
Cco01g1380 790 Gene3D - 365 501 - -
Cco01g1380 790 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 18 110 IPR037045 -
Cco01g1380 790 Pfam Subtilase family 144 609 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Cco01g1380 790 ProSiteProfiles Serine proteases, subtilase domain profile. 114 637 - -
Cco01g1380 790 ProSitePatterns Serine proteases, subtilase family, serine active site. 567 577 IPR023828 -
Cco01g1380 790 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 31 782 IPR045051 -
Cco01g1380 790 PRINTS Subtilisin serine protease family (S8) signature 143 162 IPR015500 -
Cco01g1380 790 PRINTS Subtilisin serine protease family (S8) signature 226 239 IPR015500 -
Cco01g1380 790 PRINTS Subtilisin serine protease family (S8) signature 566 582 IPR015500 -
Cco01g1380 790 Gene3D Peptidase S8/S53 domain 145 650 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco01g1380 790 Pfam Fibronectin type-III domain 688 784 IPR041469 -
Cco01g1380 790 CDD Peptidases_S8_3 108 603 IPR034197 -
Cco01g1380 790 FunFam Subtilisin-like protease SBT5.3 19 110 - -
Cco01g1380 790 Pfam Peptidase inhibitor I9 30 110 IPR010259 -
Cco01g1380 790 SUPERFAMILY Subtilisin-like 9 679 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco01g1380 790 FunFam Subtilisin-like protease SBT1.5 145 400 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1380 Cco-Chr1:24653082 Cco07g0867 Cco-Chr7:20116718 1.20E-158 dispersed
Cco01g1380 Cco-Chr1:24653082 Cco09g0103 Cco-Chr9:902807 6.60E-128 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1380 - - - 0.0