Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1391 ATGGGCATCATAGACGGTGGCACTCAAACGCCGTCTGCAAATCCGAACATGGGAAGAGAAAAGCCGAAGGTGGTGGTTATTATGGGGCCGACAGGTTCTGGGAAGTCCCGTCTCGCCATCGATTTGGCTTCTCACTTCCCCGTCGAGATCATCAACGCCGACTCTATGCAGGTTTATCGAGGGTTGGACGTTCTCTCTAACAAAGTTCCCCCCGAAGACCAAAATGGAGTACCGCATCATCTTTTAGGTACAGTGAATCCAGACGTTGAATTCACGGCTAAAGAATTCCGAGATTCTGCCGTTTCTGAAACTCTTCTTGATCTGCAAATCCGGGATTGGGAGGAAGATTTCTATCGAAGAAAGGCTTGGCAAGAAATCGGGCAAGTTGGATTTAGAGCTGGGTACTTCGGCTCGGGTAAGAGATTGCTTAGTGGTTGCTGCGGACCTGAGACGAGAGTCTTTATTCCTCAAGGCAAGAAAGGAAGTGGATGGAGGTTATTGGCGGGGGAGGTTTTTGGACTTCTTCCATCCTCTTCGAAGACTCTCCCGTCCGCACATACAGGAGCATGGTGGACAAAAGGTTTGGAAGGTGAAGCCAAAACAGTCACTTCGGGTAAGGCTATTAAGGCAAGTTTGGAGGGGAAGCTAGTGTCCGGGAAGGTATTAGGCTCTGTGATGGAGGTCAAAAGGAAAAAGGTAGAGCCAGAGAAGTCTGCAAAAGATAAGAACAGGAATTTGCGATTCAAAGTTGGAGGCAGAGAATCAAATTTGTTTGGGCTCCTCCCTCAATTCTTAAGACTTTATCTTTCAACTGTGGGATTTCCGAACGGTGGAAGAGGAAAGGAAACAGGTCTTCAAAGGAGGTTGGGTACGGCGTTGGATGTTCCCCCCTTCCTCAGAACTAAGGAGTTTATCGCCTTCATGGCAGAGTGGTGTGGAGGATTGATCGACAAAGAGTTAGATTGTTGGAGATTGACTTCGTTGGAGGAAGTTATATGTTGGTTGGAAAGGGAAGAAGATAATCGGAAGTGGTCAGAGAGTCCTTCGATTAAAGCTGTTTTGTGGTCCTTTGGTCTATCATGTGGTCAGAAAGAAAAGGAGACAGGGGGTCACGTGATTAATTTAGGGAAGAGGGAACGAGGTAGGGTTGAGAAGCATGATGGTCAAGAGGATGGGCTAGTTCGTAGCGGTTCCCAAATGCCCGATTTGGGCACCAAGGCCACAGCTGAAGCTAAAAAACGGGCTATTTTGGAAAGGTTTTTTTTTAAAAAAAATCTAGGCCGCTTTTGTTTTTTTGAGAACACCAGAGCCCAAGAAGGGATTCAAGCCCATGGGCCGATTGTTCAACTCGCTTGTACTTTGGGAGGGCTGGAGACCCATTCTACGAGAGTCGTGGAAGAACATCAAGGAATGAGACGGGAGCTAGAGGTGGGTGTCGGGTCGTCGGATCCTTTAGCTAAAGATGGGGATCTTGGATCCGACCCATCGATTGTTAGTTATTCTGACGATGAATCGTTTCTCTCAACTTCGATGTTGAACAAAGCGGCGGAGAAGGGCGTCGAGGGGATGTTTTCGGAAGATGCAAATGCTCAAGGAGATTCAAATCTGAATCCTGTTTCGAAAGTGTTGTTTGAGCAAGTGAGCTGGGATGGGTTAATAAGCAATGGTGATGTTGCTCAAGTGAAGGTGCCGAAGGCTGTGGATGGAGTTGCTGACACAAAAGTGATGAATAAAACGGGCTTTGAGAATCAGAAGGCTCCGCCTTTTGATAGAGGCTATTCCTCAGGTCTTGCTATTGGATCTTGCTCCTACTCCTATCCGATGGTGATTGATGACATAATTTCTCGTGGATGCTTGCCAATGATAGTGGGTGGAACAAATTATTATATACAGGCTCTTGTTAGCCCGTTTCTTCTGGATGATTCTGCCGAAAATGTTGGGGGAAGTTGCTCCATTTATCCTGGAGATGAAGAACTGGGTATTGAGTTGAATGAGGGAAGAGATGGTTTGAAGTATGACCATAACCATCTTAAAGAGATTGATCCAGTTTCGGCTAACAGAATCCATCCTAATAACCACAGAAAAATAAATCAATACCTGAGTTTGTATTATCGCACTGGTGTTCTTCCCAGCACACTTTTTCAAGGAACGGCTAATGAGAATTGGGGTCAAGCTGATAGTTTCAGATATGATTGCTGCTTGATATGTGTCGATGCTTCTGTTCCACAACTTGATGGACATGTTGATTCTAGAGTTGATAGCATGATGGCTGCTGGATTACTTGATGAGGTTTATGACATTTACAATCCAAATGCAAACTATACTAAAGGAGTGCGTCAAGCTATTGGTGTTCGGGAGTTTGAAGAGTTTTTGAGATATTATGTACCTAAAGGTAGATGCGAAAAAGATAGTGCTGGCCTTAGCCCAAAAAAAATAATGGAGTGCAATGAGATTGAGAATATAAGGTCAATCCTGAATTCACCAAGTAATAGCCAACCCAGTTTGCTACTGAAAGAAGCCATAGATAATGTAAAGTTGAATACTAGAAGACTGGTTCGTCGTCAGAGGAGGCAGCTAAAGAGACTGGAGACTTTGTTTGGATGGAAGATCCACTATGTTGATTCCACGGAATATATAACATGCAAAGTGGAGGATTCATGGACTACACAAGTCGTTGAACCTGCAGTCCAGATAATTAGGTCTTTCCTTAAAGATGGTTCGGGGACTGAAACAATGAATCCGCATAGTTCAGGGCAAACAATCAAGAAGGACGTGTGGACACAATATATATGCCAGGCTTGTGGGAATAAAGTACTAAGGGGAGCACATGAATGGGAACAACACAATCAAGGTCGCACACATAGAAAACGAATGTATCGGCTTAAGAAGAAGTGTGAAGGGCTTTCCTTGATGCAACAGAAACTACCTCTTCAAGAGTAA 2940 44.8 MGIIDGGTQTPSANPNMGREKPKVVVIMGPTGSGKSRLAIDLASHFPVEIINADSMQVYRGLDVLSNKVPPEDQNGVPHHLLGTVNPDVEFTAKEFRDSAVSETLLDLQIRDWEEDFYRRKAWQEIGQVGFRAGYFGSGKRLLSGCCGPETRVFIPQGKKGSGWRLLAGEVFGLLPSSSKTLPSAHTGAWWTKGLEGEAKTVTSGKAIKASLEGKLVSGKVLGSVMEVKRKKVEPEKSAKDKNRNLRFKVGGRESNLFGLLPQFLRLYLSTVGFPNGGRGKETGLQRRLGTALDVPPFLRTKEFIAFMAEWCGGLIDKELDCWRLTSLEEVICWLEREEDNRKWSESPSIKAVLWSFGLSCGQKEKETGGHVINLGKRERGRVEKHDGQEDGLVRSGSQMPDLGTKATAEAKKRAILERFFFKKNLGRFCFFENTRAQEGIQAHGPIVQLACTLGGLETHSTRVVEEHQGMRRELEVGVGSSDPLAKDGDLGSDPSIVSYSDDESFLSTSMLNKAAEKGVEGMFSEDANAQGDSNLNPVSKVLFEQVSWDGLISNGDVAQVKVPKAVDGVADTKVMNKTGFENQKAPPFDRGYSSGLAIGSCSYSYPMVIDDIISRGCLPMIVGGTNYYIQALVSPFLLDDSAENVGGSCSIYPGDEELGIELNEGRDGLKYDHNHLKEIDPVSANRIHPNNHRKINQYLSLYYRTGVLPSTLFQGTANENWGQADSFRYDCCLICVDASVPQLDGHVDSRVDSMMAAGLLDEVYDIYNPNANYTKGVRQAIGVREFEEFLRYYVPKGRCEKDSAGLSPKKIMECNEIENIRSILNSPSNSQPSLLLKEAIDNVKLNTRRLVRRQRRQLKRLETLFGWKIHYVDSTEYITCKVEDSWTTQVVEPAVQIIRSFLKDGSGTETMNPHSSGQTIKKDVWTQYICQACGNKVLRGAHEWEQHNQGRTHRKRMYRLKKKCEGLSLMQQKLPLQE 979
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24967426 24986256 + CcPI632755_01g013910.1 Cco01g1391 170253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1391 979 MobiDBLite consensus disorder prediction 1 20 - -
Cco01g1391 979 Hamap tRNA dimethylallyltransferase [miaA]. 24 904 IPR018022 GO:0008033(InterPro)|GO:0052381(InterPro)
Cco01g1391 979 Gene3D - 588 927 IPR027417 -
Cco01g1391 979 Gene3D - 21 102 IPR027417 -
Cco01g1391 979 FunFam tRNA dimethylallyltransferase 924 966 - -
Cco01g1391 979 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 609 914 IPR039657 GO:0005739(PANTHER)|GO:0006400(PANTHER)|GO:0052381(PANTHER)
Cco01g1391 979 Gene3D - 657 717 - -
Cco01g1391 979 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 87 IPR027417 -
Cco01g1391 979 Gene3D Classic Zinc Finger 928 967 - -
Cco01g1391 979 MobiDBLite consensus disorder prediction 384 404 - -
Cco01g1391 979 Pfam IPP transferase 609 860 - -
Cco01g1391 979 Pfam IPP transferase 57 101 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0650 Cco-Chr1:6661319 Cco01g1391 Cco-Chr1:24967426 1.50E-35 dispersed
Cco01g0651 Cco-Chr1:6661757 Cco01g1391 Cco-Chr1:24967426 5.80E-26 dispersed
Cco01g0652 Cco-Chr1:6662109 Cco01g1391 Cco-Chr1:24967426 2.20E-19 dispersed
Cco01g1336 Cco-Chr1:22007614 Cco01g1391 Cco-Chr1:24967426 8.00E-25 dispersed
Cco01g1337 Cco-Chr1:22007978 Cco01g1391 Cco-Chr1:24967426 2.40E-14 dispersed
Cco01g1391 Cco-Chr1:24967426 Cco09g0657 Cco-Chr9:5848365 8.80E-21 dispersed
Cco01g1391 Cco-Chr1:24967426 Cco06g0592 Cco-Chr6:6393073 1.60E-22 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1391 K00791 - csv:101202758 656.366