Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1432 ATGGACATCAAGCCACACCAATCTTGTAATATCTGCGGCGGCGGCGGCGGCGGCGACTTCATGGCGGCTCTGCCATCCTCTTCCGCTTTACCGGATTCTTCTTCCTCCAGACACCATACCTACAGTAGGAAGCAGAAATCCCTTGGTCTTTTATGTTCAAACTTTTTGAGCTTGTATAACCACGATGGAGTGCATTCGATAGGGCTTGACGATGCAGCATCGCGATTAGGTGTGGAAAGGCGGCGGATCTATGATATTGTGAATGTTTTGGAGAGCGTCGGGGTTCTGTCGAGAAAGGCGAAGAATCAGTACAGCTGGAATGGGTTTGGAGCAATCCCTAAGGCCTTACAAGATCTTAAAGAAGAGGGCTTGAGGGAGAATTGCAGTGCATCCGATGGTAACGATTATGCGAAAGTATCGGATGATGAAGATGAGGATGAAAGATTTTCCAATCCAACCGGAAGCCAGACCTCAACTGCAGCTGTGCCAAAATCATCTTCATCATCATTAAAAGCCGACAATAGAAGGGAAAAGTCTTTGGCGCTCCTGACGCAAAATTTTGTTAAGCTATTTATCTGCAGTCATGTGAATATGATTTCCCTTGATGAAGCTGCTAAGCTTTTATTAGGAGATGGCCACAATTCATCAATAATGAGAACAAAAGTAAGGAGGCTATATGACATTGCAAATGTGCTGTCTTCTATGAATCTGATTGAAAAGACCCATACAACAGATACTAGAAAGCCTGCTTTTAGGTGGTTGGGAGTGAGGGGTAAAGTCAAGAATGAGCCTACCGTTCTTACAGAGTCCAGAAAAAGAGCATTTGGAACTGATGTAACTAATGTCAGTTATAAGAAGACTAAAGCTGAAAGTTCAGCGTATCAGGGTTTAAATCATTGCCTTAACATGCAAAAGCTAGTGCAGTGTGAGAATTCTTCGCAAGAGGATAGCCAAAATAGTCAGGATCAAGAATGCGAACGAACTTCCAAGAGCTATCAATTTGGACCCTTTGCTCCGGTAACAGTAGCTAAAGTTGGTGTGTCAGACAATAACAATACGAAGCGGACTCATGACTGGGAAAGCCTTTCCTCAACATTCCGTCCTCAGTATCACAATCAAGCCTTAAACGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTATTCTGAAGCAGTGAAGAAACCTATACAAATATCTTGA 1206 43.45 MDIKPHQSCNICGGGGGGDFMAALPSSSALPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLRENCSASDGNDYAKVSDDEDEDERFSNPTGSQTSTAAVPKSSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAAKLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPTVLTESRKRAFGTDVTNVSYKKTKAESSAYQGLNHCLNMQKLVQCENSSQEDSQNSQDQECERTSKSYQFGPFAPVTVAKVGVSDNNNTKRTHDWESLSSTFRPQYHNQALNELFSHYVEAWKSWYSEAVKKPIQIS 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26083340 26086709 + CcPI632755_01g014320.1 Cco01g1432 170294

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1432 401 SUPERFAMILY Winged helix DNA-binding domain 42 106 IPR036390 -
Cco01g1432 401 PANTHER TRANSCRIPTION FACTOR E2F 27 374 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Cco01g1432 401 MobiDBLite consensus disorder prediction 126 173 - -
Cco01g1432 401 SUPERFAMILY Winged helix DNA-binding domain 177 256 IPR036390 -
Cco01g1432 401 MobiDBLite consensus disorder prediction 151 169 - -
Cco01g1432 401 Pfam E2F/DP family winged-helix DNA-binding domain 44 108 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cco01g1432 401 Pfam E2F/DP family winged-helix DNA-binding domain 176 255 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cco01g1432 401 SMART E2F_TDP_2 175 255 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cco01g1432 401 SMART E2F_TDP_2 43 108 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cco01g1432 401 Gene3D - 38 111 IPR036388 -
Cco01g1432 401 Gene3D - 170 257 IPR036388 -
Cco01g1432 401 FunFam E2F transcription factor-like E2FE 170 257 - -
Cco01g1432 401 FunFam E2F transcription factor 8 38 110 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1432 K09391 - - csv:101219210 709.138
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1432 Cco-Chr1:26083340 Cco02g2395 Cco-Chr2:36291562 1.80E-09 dispersed
Cco01g1432 Cco-Chr1:26083340 Cco06g1871 Cco-Chr6:28935436 1.20E-101 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco01g1432 . 38 396 E2F-DP Transcription Factor Family AT3G48160 56.5 1.3e-103 373.6
Cco10g0876 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 6.4e-60 228.0
Cco02g2395 . 51 471 E2F-DP Transcription Factor Family AT2G36010 55.1 3.1e-120 429.1
Cco04g1250 . 11 467 E2F-DP Transcription Factor Family AT2G36010 54.2 1.0e-118 424.1
Cco02g2395 . 40 476 E2F-DP Transcription Factor Family AT5G22220 57.6 7.7e-116 414.5
Cco04g1250 . 11 460 E2F-DP Transcription Factor Family AT5G22220 50.3 1.2e-97 354.0
Cco08g1629 . 154 413 E2F-DP Transcription Factor Family AT1G47870 53.1 2.1e-66 250.0
Cco02g2395 . 169 445 E2F-DP Transcription Factor Family AT1G47870 50.9 6.4e-63 238.4
Cco10g0876 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 6.4e-60 228.0
Cco02g2395 . 40 476 E2F-DP Transcription Factor Family AT5G22220 57.6 7.7e-116 414.5
Cco04g1250 . 11 460 E2F-DP Transcription Factor Family AT5G22220 50.3 1.2e-97 354.0
Cco02g2395 . 51 471 E2F-DP Transcription Factor Family AT2G36010 55.1 3.1e-120 429.1
Cco04g1250 . 11 467 E2F-DP Transcription Factor Family AT2G36010 54.2 1.0e-118 424.1
Cco08g1629 . 154 413 E2F-DP Transcription Factor Family AT1G47870 53.1 2.1e-66 250.0
Cco02g2395 . 169 445 E2F-DP Transcription Factor Family AT1G47870 50.9 6.4e-63 238.4
Cco01g1432 . 38 396 E2F-DP Transcription Factor Family AT3G48160 56.5 1.3e-103 373.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001341 2 8 2 2 1 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 1 2 2 2 2 2 5 4 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58625 PF02319 E2F_TDP 2.50E-20 CL0123 Cco TF