Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1432 ATGGACATCAAGCCACACCAATCTTGTAATATCTGCGGCGGCGGCGGCGGCGGCGACTTCATGGCGGCTCTGCCATCCTCTTCCGCTTTACCGGATTCTTCTTCCTCCAGACACCATACCTACAGTAGGAAGCAGAAATCCCTTGGTCTTTTATGTTCAAACTTTTTGAGCTTGTATAACCACGATGGAGTGCATTCGATAGGGCTTGACGATGCAGCATCGCGATTAGGTGTGGAAAGGCGGCGGATCTATGATATTGTGAATGTTTTGGAGAGCGTCGGGGTTCTGTCGAGAAAGGCGAAGAATCAGTACAGCTGGAATGGGTTTGGAGCAATCCCTAAGGCCTTACAAGATCTTAAAGAAGAGGGCTTGAGGGAGAATTGCAGTGCATCCGATGGTAACGATTATGCGAAAGTATCGGATGATGAAGATGAGGATGAAAGATTTTCCAATCCAACCGGAAGCCAGACCTCAACTGCAGCTGTGCCAAAATCATCTTCATCATCATTAAAAGCCGACAATAGAAGGGAAAAGTCTTTGGCGCTCCTGACGCAAAATTTTGTTAAGCTATTTATCTGCAGTCATGTGAATATGATTTCCCTTGATGAAGCTGCTAAGCTTTTATTAGGAGATGGCCACAATTCATCAATAATGAGAACAAAAGTAAGGAGGCTATATGACATTGCAAATGTGCTGTCTTCTATGAATCTGATTGAAAAGACCCATACAACAGATACTAGAAAGCCTGCTTTTAGGTGGTTGGGAGTGAGGGGTAAAGTCAAGAATGAGCCTACCGTTCTTACAGAGTCCAGAAAAAGAGCATTTGGAACTGATGTAACTAATGTCAGTTATAAGAAGACTAAAGCTGAAAGTTCAGCGTATCAGGGTTTAAATCATTGCCTTAACATGCAAAAGCTAGTGCAGTGTGAGAATTCTTCGCAAGAGGATAGCCAAAATAGTCAGGATCAAGAATGCGAACGAACTTCCAAGAGCTATCAATTTGGACCCTTTGCTCCGGTAACAGTAGCTAAAGTTGGTGTGTCAGACAATAACAATACGAAGCGGACTCATGACTGGGAAAGCCTTTCCTCAACATTCCGTCCTCAGTATCACAATCAAGCCTTAAACGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTATTCTGAAGCAGTGAAGAAACCTATACAAATATCTTGA 1206 43.45 MDIKPHQSCNICGGGGGGDFMAALPSSSALPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLRENCSASDGNDYAKVSDDEDEDERFSNPTGSQTSTAAVPKSSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAAKLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPTVLTESRKRAFGTDVTNVSYKKTKAESSAYQGLNHCLNMQKLVQCENSSQEDSQNSQDQECERTSKSYQFGPFAPVTVAKVGVSDNNNTKRTHDWESLSSTFRPQYHNQALNELFSHYVEAWKSWYSEAVKKPIQIS 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26083340 26086709 + CcPI632755_01g014320.1 Cco01g1432 170294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1432 401 SUPERFAMILY Winged helix DNA-binding domain 42 106 IPR036390 -
Cco01g1432 401 PANTHER TRANSCRIPTION FACTOR E2F 27 374 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Cco01g1432 401 MobiDBLite consensus disorder prediction 126 173 - -
Cco01g1432 401 SUPERFAMILY Winged helix DNA-binding domain 177 256 IPR036390 -
Cco01g1432 401 MobiDBLite consensus disorder prediction 151 169 - -
Cco01g1432 401 Pfam E2F/DP family winged-helix DNA-binding domain 44 108 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cco01g1432 401 Pfam E2F/DP family winged-helix DNA-binding domain 176 255 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cco01g1432 401 SMART E2F_TDP_2 175 255 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cco01g1432 401 SMART E2F_TDP_2 43 108 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cco01g1432 401 Gene3D - 38 111 IPR036388 -
Cco01g1432 401 Gene3D - 170 257 IPR036388 -
Cco01g1432 401 FunFam E2F transcription factor-like E2FE 170 257 - -
Cco01g1432 401 FunFam E2F transcription factor 8 38 110 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1432 Cco-Chr1:26083340 Cco02g2395 Cco-Chr2:36291562 1.80E-09 dispersed
Cco01g1432 Cco-Chr1:26083340 Cco06g1871 Cco-Chr6:28935436 1.20E-101 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58625 PF02319 E2F_TDP 2.50E-20 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1432 K09391 - csv:101219210 709.138