Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1435 ATGGTCGGGCATGGCAATCACAGGCTGAAACTCTCCATCTTCCACCACCGATCTTCCTCAGACTCCAAACCCGAACGCCCAAAAGAGTATCCCGAAGAGTACCTCTGCCCAATTTCTAAGTCTTTAATGGCGGACCCAGTTGTCGTCTCCTCTGGTCACACCTTCGAGCGTCTCTCTGTTCAAGTTTGTCAAGATTTGGGGTTTTCGCCCAAGCTTGAAGAAGATGGTTCAAGGCCGGATTTCTCCTCTGTTATTACCAACAGAAACATGAGATTCACTATTCTCAAATGGTGCGATAATAACGGAATCGAACATCCACAAACCCCTGATTACAGCTCCATTGAACTCATTGTTCGTCGATTAATGGAGAAGCAGAGGCAGGAGAATCGATTCGAAGCTTCTGATAGCGAGTTGATTAGGGGCGTCGCCGATAAACCGCAGGGAGTTGCTGTTCATGCGACCACCGAGGTTGGGCTACGACTCAACCGATTTCAACTCGACTCGCCGCCGCAGAAGGAGGAGATCGTACGAGAAAGTACTATTTTGCCCTTCAAAACGCAACCCTCTAGTTATGCTGCTCATTCTTCTTCCTCTTCACATGGAAGCTTCGATAGAGATCCTAATCACAGAGGATATTCTGATTCGTATTCCCCAAATTCAGAAGAAGAATCTATACTCATTTTGAAATTCAGAAGCAACGATGAATTCGAGCAACGAGAAGGAGTGATATCCCTAAGAAAATTAACTAAATCCAACGAATCGATTAGGGTTTCTTTATGCACAAAGGAATTCCTCGCCGCCCTACTTCCTTTGGTTTTGTCCCGATCTACAAATATCCAGATCAACGCAGTAGCTTCCGTCGTGAATCTCTCTCTCGAGAAACCCAACAAATTGAAGATCGTACGGGCAGGATTTGTTCCGCCATTAATCGACGTTTTAGACGGCAGAAGCGCCGAAGCTCAAGAACACGCCGCCGGTGCTCTGTTCAGTTTATCGTTAGACGACGAGAACAAAATGGCGATTGGAATTCTCGGCGCGTTACCGGTGCTGATGAATACGCTCCGAGCCGACAGCGAGAGAACGAGGAACGATTCAGCTCTTTGTTTGTACCATTTGACACTAAACCCTAGCAACCGAGTTAAACTGGTGAAACTCGGCGCCGTACCGATTCTGCTGTCGTTGACGAGAATCGAAGGTTGTGCGAGCCGAATACTTCTGATTCTGTGCAATATCGCGGTCTCTGTGGATGGGAGATCGGCGATGCTGGATGCGAATGCGGTGGGTTGTTTGGTGGAGATATTGAAGGAGAAGGACATGGATTCCGAGTCGACTCGGGAGAATTGTGTGGTGGCGCTTTACGCACTGAGTCAAGGAGGATTCCGATTCAAAGGATTGGCGAAGGAGGCCGGCGCGGTGGAGGTTCTGAGACAGGTTGAAGAAAGGGGAAGCGAGCGGGCAAGGGAAAAAGCCAAGAGGATTTTGCAGATGATGAGAACCGGCGGAAGCGGTTCGGTCGAGATTGAAGGCGTCGGCCGAAATGGGCTCGACGCTGGTGGAGTCAGCTGGACCGGTCGGGTTGGTGCTGGCTTGAACCGGTACTCTACAAATACCACTAAGTTTTGA 1623 49.17 MVGHGNHRLKLSIFHHRSSSDSKPERPKEYPEEYLCPISKSLMADPVVVSSGHTFERLSVQVCQDLGFSPKLEEDGSRPDFSSVITNRNMRFTILKWCDNNGIEHPQTPDYSSIELIVRRLMEKQRQENRFEASDSELIRGVADKPQGVAVHATTEVGLRLNRFQLDSPPQKEEIVRESTILPFKTQPSSYAAHSSSSSHGSFDRDPNHRGYSDSYSPNSEEESILILKFRSNDEFEQREGVISLRKLTKSNESIRVSLCTKEFLAALLPLVLSRSTNIQINAVASVVNLSLEKPNKLKIVRAGFVPPLIDVLDGRSAEAQEHAAGALFSLSLDDENKMAIGILGALPVLMNTLRADSERTRNDSALCLYHLTLNPSNRVKLVKLGAVPILLSLTRIEGCASRILLILCNIAVSVDGRSAMLDANAVGCLVEILKEKDMDSESTRENCVVALYALSQGGFRFKGLAKEAGAVEVLRQVEERGSERAREKAKRILQMMRTGGSGSVEIEGVGRNGLDAGGVSWTGRVGAGLNRYSTNTTKF 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26127504 26129126 + CcPI632755_01g014350.1 Cco01g1435 170297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1435 540 PANTHER U BOX DOMAIN-CONTAINING 17 499 - -
Cco01g1435 540 SMART arm_5 334 374 IPR000225 GO:0005515(InterPro)
Cco01g1435 540 SMART arm_5 414 457 IPR000225 GO:0005515(InterPro)
Cco01g1435 540 SMART arm_5 293 333 IPR000225 GO:0005515(InterPro)
Cco01g1435 540 SMART arm_5 375 413 IPR000225 GO:0005515(InterPro)
Cco01g1435 540 SUPERFAMILY RING/U-box 16 107 - -
Cco01g1435 540 SMART Ubox_2 33 97 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco01g1435 540 Pfam U-box domain 31 98 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco01g1435 540 SUPERFAMILY ARM repeat 227 497 IPR016024 -
Cco01g1435 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 108 IPR013083 -
Cco01g1435 540 MobiDBLite consensus disorder prediction 187 202 - -
Cco01g1435 540 Pfam Armadillo/beta-catenin-like repeat 295 332 IPR000225 GO:0005515(InterPro)
Cco01g1435 540 Gene3D - 169 401 IPR011989 -
Cco01g1435 540 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 304 341 IPR000225 GO:0005515(InterPro)
Cco01g1435 540 ProSiteProfiles U-box domain profile. 29 104 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco01g1435 540 Gene3D - 402 501 IPR011989 -
Cco01g1435 540 MobiDBLite consensus disorder prediction 187 218 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1435 Cco-Chr1:26127504 Cco03g0164 Cco-Chr3:1593850 2.30E-10 dispersed
Cco01g1435 Cco-Chr1:26127504 Cco06g1875 Cco-Chr6:28967718 2.30E-95 wgd
Cco01g1435 Cco-Chr1:26127504 Cco09g2079 Cco-Chr9:35193452 6.60E-79 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1435 - - - 0.0