Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1437 ATGACTTTCCCTTTCCCTTTACTTTTCCTCATTACTATCACCATCTCCTTTTCCCTCCCCTTCCCCTCTCTTGTTCACTCCAAACTCACCCTTGGTTATTACCAAAAAACCTGTCCCGACTTCGAAAAGATCATTCGCGAAACTGTCACCAATAAACAAATCACCAGCCCTGTCACTGCCGCTGGAACCCTTCGCCTCTTCTTCCACGACTGCATGGTTGATGGTTGCGACGCCTCCATCCTCATTTCCTCCAACTCCTTCAACCAAGCCGAGCGTGAGGCTGAAATCAACCATTCCCTCTCTGGTGACGCCTTCGACGTCGTCGTCCATGCTAAGACCAACCTCGAACTTGCTTGCCCTGGCATTGTCTCTTGTTCCGACATCTTGGCACAGGCAACTCGAGATTTAGTGGTGATGGTAGGAGGACCATTCTACAACGTTCGATTGGGGAGAAAAGATGGAATGTTATCAAAAGTAGAAAACGTGGAAGGGAACCTTCCAAAAGTGGACTTCTCAATAGACAAACTCATCGATTTCTTCACCCAAAGAGGCTTCACCATCCAAGAACTAGTCGCCCTCTCCGGAGGCCACACCATCGGCTTCTCCCACTGCAAGGAATTCTCCGACCGCCTCTTTAACTTCAACGCCATGTCACCCACCGACCCCGACATTTACCCCAAATTCGCCGAAAAGCTCAAGGCCATGTGTGCCAATTACCTCACAGACACTGCCATGTCAGCTTTCAATGACGTCATGACACCTGGCAAATTCGACAACATGTACTTCCAAAATCTTCCACGTGGCCTTGGCCTACTCGCCACTGACAACGCCCTCTATAAAGACCCTAGGACCAAGCCGTTTGTGGATCTTTACGCCGTTAATCAAACGGCATTTTTTAAGGACTTTGCTCACGCAATGGAGAAGCTCAGCGTTTACGGCGTTAAGACGGGAAGGAAAGGGGAGGTTCGACGAAGGTGTGACCTCTTTAATTCCATTCAGACATGA 1005 49.25 MTFPFPLLFLITITISFSLPFPSLVHSKLTLGYYQKTCPDFEKIIRETVTNKQITSPVTAAGTLRLFFHDCMVDGCDASILISSNSFNQAEREAEINHSLSGDAFDVVVHAKTNLELACPGIVSCSDILAQATRDLVVMVGGPFYNVRLGRKDGMLSKVENVEGNLPKVDFSIDKLIDFFTQRGFTIQELVALSGGHTIGFSHCKEFSDRLFNFNAMSPTDPDIYPKFAEKLKAMCANYLTDTAMSAFNDVMTPGKFDNMYFQNLPRGLGLLATDNALYKDPRTKPFVDLYAVNQTAFFKDFAHAMEKLSVYGVKTGRKGEVRRRCDLFNSIQT 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26147403 26148688 - CcPI632755_01g014370.1 Cco01g1437 170299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1437 334 SUPERFAMILY Heme-dependent peroxidases 29 330 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco01g1437 334 ProSitePatterns Peroxidases active site signature. 60 71 IPR019794 GO:0004601(InterPro)
Cco01g1437 334 CDD secretory_peroxidase 28 329 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco01g1437 334 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco01g1437 334 PRINTS Haem peroxidase superfamily signature 123 140 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco01g1437 334 PRINTS Haem peroxidase superfamily signature 189 204 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco01g1437 334 PRINTS Haem peroxidase superfamily signature 141 153 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco01g1437 334 PRINTS Haem peroxidase superfamily signature 250 265 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco01g1437 334 FunFam Peroxidase 32 177 - -
Cco01g1437 334 Pfam Peroxidase 46 293 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco01g1437 334 ProSitePatterns Peroxidases proximal heme-ligand signature. 189 199 IPR019793 -
Cco01g1437 334 Gene3D Peroxidase, domain 2 167 309 - -
Cco01g1437 334 FunFam Peroxidase 167 309 - -
Cco01g1437 334 Gene3D - 32 330 - -
Cco01g1437 334 ProSiteProfiles Plant heme peroxidase family profile. 28 330 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco01g1437 334 PANTHER - 16 330 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco01g1437 334 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco01g1437 334 PRINTS Plant peroxidase signature 141 156 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco01g1437 334 PRINTS Plant peroxidase signature 264 281 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco01g1437 334 PRINTS Plant peroxidase signature 188 200 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco01g1437 334 PRINTS Plant peroxidase signature 248 263 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco01g1437 334 PRINTS Plant peroxidase signature 304 317 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco01g1437 334 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco01g1437 334 PRINTS Plant peroxidase signature 122 132 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco01g1437 334 PRINTS Plant peroxidase signature 103 116 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1437 Cco-Chr1:26147403 Cco04g1499 Cco-Chr4:30414089 1.00E-77 dispersed
Cco03g0656 Cco-Chr3:6689126 Cco01g1437 Cco-Chr1:26147403 3.30E-71 transposed
Cco01g1437 Cco-Chr1:26147403 Cco10g1444 Cco-Chr10:27562999 2.60E-110 wgd
Cco01g1437 Cco-Chr1:26147403 Cco06g1876 Cco-Chr6:28979069 2.50E-121 wgd
Cco01g1437 Cco-Chr1:26147403 Cco09g2080 Cco-Chr9:35195624 1.10E-108 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1437 K00430 - csv:101220163 602.053