Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1451 ATGGCTGATCATTTTTCACTCATTGGAATTATAAGTGAGGACTCTAATCAAATAATCATAATATCTATCATCATTCTATATGAATTAGAGCCCCACATTTACTCAGATAGAAATTTCAAGCCAGATCCATACCTGGCCACAATCCTCAACTGCGTCACGTGGGTGTTCTATGAAATGCCCTTTGTTCATCCTGACAATGTCCTCGTCGTTACCATAAATGGCATTGGGTTTTTCATCGAGCTCATCTATGTTTCCATCTTCTTTATCTATTCTCCATGGGTCAAGAGACGACAAGTCATCAAAACAAAGAGCGTGAAATACATGCCATTTACTCTCTCCCTCGCCAACTTTTGCAATGGTATCGTATGGGCCATTTATGCTATTCTCAAATTCGATCCTAATGTGTTGATTCCAAACAGTTTGGGAGCTCTTTCAGGGTTGATACAGTTGATTTTGTATGCAACTTACTACAAAACCACAAATTGGGACGATGACGACATGTCGAACTGGAAGAAACCAACGGAGGTGCAAATGACCGACGTGTAG 546 40.29 MADHFSLIGIISEDSNQIIIISIIILYELEPHIYSDRNFKPDPYLATILNCVTWVFYEMPFVHPDNVLVVTINGIGFFIELIYVSIFFIYSPWVKRRQVIKTKSVKYMPFTLSLANFCNGIVWAIYAILKFDPNVLIPNSLGALSGLIQLILYATYYKTTNWDDDDMSNWKKPTEVQMTDV 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26259353 26260540 + CcPI632755_01g014510.1 Cco01g1451 170313

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1451 181 PANTHER RAG1-ACTIVATING PROTEIN 1 91 158 IPR047664 GO:0008643(PANTHER)|GO:0016021(PANTHER)|GO:0051119(InterPro)|GO:0051119(PANTHER)
Cco01g1451 181 Pfam Sugar efflux transporter for intercellular exchange 38 92 IPR004316 GO:0016020(InterPro)
Cco01g1451 181 Pfam Sugar efflux transporter for intercellular exchange 94 160 IPR004316 GO:0016020(InterPro)
Cco01g1451 181 Gene3D - 92 161 - -
Cco01g1451 181 Gene3D - 33 91 - -
Cco01g1451 181 FunFam Bidirectional sugar transporter SWEET 82 166 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1451 K15382 - - csv:101222361 219.164
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1451 Cco-Chr1:26259353 Cco08g0814 Cco-Chr8:19979520 1.60E-37 dispersed
Cco01g1450 Cco-Chr1:26246034 Cco01g1451 Cco-Chr1:26259353 1.30E-63 tandem
Cco01g1451 Cco-Chr1:26259353 Cco01g1452 Cco-Chr1:26266934 9.40E-54 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g725 . . Bda06g00588 . Bpe12g00591 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00363 Csa01g00840 Chy12g01278 Cme12g01704 Blo13g00054 Blo15g00273 . . Bpe07g00830 . . . . . . . Cma18g00160 . . . . . . . . . . . Cla01g01289 Cam01g1439 Cec01g1477 Cco01g1451 Clacu01g1356 . Cre01g1275 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000285 7 4 5 3 5 3 1 9 9 2 8 7 3 3 3 2 7 0 4 6 3 2 8 6 9 5 7 8 5 3 147