Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1455 ATGGCTATTCGAGGAGTCGATTTCAAATGGTACGATGGGTTCTTCTTGTCGATGCTTGCTACTAGTATAATAATTGTGACCATCAATTGGAGAAGGTACAATACTTGTACGTATCCTTTGCACATATGGATTGTGGTTGATTATACTTCTGTGTTTGCATTTCGCCTTTTGCTGTTCATCGATAATGCACTTTCAGCTGGAATGGGATTAGATTTTGGATGGCAGCAGCGATATGCTCGGTTTTGTGGAAGAGTTGTGGTTCTTTCTATCCTCTCTCTATTGCTCTACCCCTTTCTATGTGCCTGGACTGTAATTGGCACCCTGTGGTTTAGAGATGCTAAAGATTGTTTGCCTGAAGAAGGACAGAAATGGGGTTTCCTCATTTGGTTGCTTTTCAGCTACTGTGCCCTCCTTTGCATTGCCTGCATGTCAGTTGGAAAGTGGCTAGCGCGTAGGCAAGCGCACTTGTTCCGTGCCCAACAAGGCATACCAGTATCAGAATATGGGGTACTGGTTGATATGATTAGAGTTCCTGATTGGGCATATGAAGCTGCAGGACTGGAAACACGAGGCATAGGCCAAGATGCTACTGGGTACCATCCCGGGCTGTTCTTGACCTCGGCTCAGAGGGAAGCTGTGGAAGCTCTCATCCAGGAACTTCCAAAGTTCAGGCTGAAGGCTGTCCCAACTGATTGCAGTGAATGCCCTATTTGCCTTGAAGAGTTCCATGTAGGGAATGAGGTCCGTGGTATGCCATGTGCTCATAATTTCCACGTTGAATGTATCGACGAGTGGCTTCGTCTGAATGTTAAATGTCCTCGATGCCGCTCCTCTGTCTTCCCAAATCTCGACCTCAGCGCTCTTTCTAACCTGCATTCAGACACAGAACAAACATCTGACAATGCTTTTGTAACAACCCAACCTTCAAGTTTATCGAGATCGACTCCAACCCCTGCAGCTCATACCGAAAACACAACAGACCTCTATACTGACACTGCCTTAGAAGCTGTGGAGAATGGAAACTCACCTCTGCCATCTGCTTCTCCACATTGA 1053 46.34 MAIRGVDFKWYDGFFLSMLATSIIIVTINWRRYNTCTYPLHIWIVVDYTSVFAFRLLLFIDNALSAGMGLDFGWQQRYARFCGRVVVLSILSLLLYPFLCAWTVIGTLWFRDAKDCLPEEGQKWGFLIWLLFSYCALLCIACMSVGKWLARRQAHLFRAQQGIPVSEYGVLVDMIRVPDWAYEAAGLETRGIGQDATGYHPGLFLTSAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGMPCAHNFHVECIDEWLRLNVKCPRCRSSVFPNLDLSALSNLHSDTEQTSDNAFVTTQPSSLSRSTPTPAAHTENTTDLYTDTALEAVENGNSPLPSASPH 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26310369 26313628 + CcPI632755_01g014550.1 Cco01g1455 170317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1455 350 SMART ring_2 235 275 IPR001841 -
Cco01g1455 350 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Cco01g1455 350 MobiDBLite consensus disorder prediction 297 324 - -
Cco01g1455 350 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
Cco01g1455 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Cco01g1455 350 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 343 IPR044793 GO:0004842(InterPro)|GO:0010182(InterPro)
Cco01g1455 350 Pfam Ring finger domain 234 276 IPR001841 -
Cco01g1455 350 SUPERFAMILY RING/U-box 217 284 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1455 Cco-Chr1:26310369 Cco05g0107 Cco-Chr5:888750 1.90E-10 dispersed
Cco01g1455 Cco-Chr1:26310369 Cco06g1898 Cco-Chr6:29172697 1.80E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1455 K16284 - csv:101222360 696.427