Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1456 ATGAGGAATTTAAACTGGTTTAAGCCAATTTCGATTAATGGGAAGCCTGGGAGGAGGCTTTCACTAGGAGAATACCAGCGTGCTGTGTCGTGGTCTAAGTATTTGGTGTCTTCAGGAGCAGAGATAAAGGGAGAGGGAGAAGAGGAATGGAGTGCTGACATGTCCCAGTTGTTCATTGGCTTCAAATTTGCTACTGGAAGGCACAGTAGGATTTACAGAGGTGTGTATAAACAGAGGGATGTTGCAATTAAGCTGATAAGCCAGCCTGAGGAGGATGAAAATTTGGCTAACTTTCTTGAGAATCAGTTCATTTCAGAGGTGGCATTGCTGTTCAGATTGAGACATCCCAATATCATCACTTGCCTTTTTATGGCAGCAAGCAATGCTTTTAGCATCTTATCACGGGAAGAGCAGGGGAAAATGACTTCTGTATTCCCTGAAAATGATAAAGATAATTTCATTGCAGCTTGCAAGAAACCTCCAGTGTTTTGTATTATCACGGAGTATATGACAGGAGGTTCGTTAAGAAAATATCTCCATCAACAAGAGCCACATTCCGTTCCGCTGAACTTGGTTCTGAAACTAGCCCTCGAAATCTCACGTGGGATGCAGTACCTTCATTCTCAGGGAATACTCCACAGAGATCTCAAATCAGAAAATCTCTTACTCGGTGAAGATATGTGTGTTAAGGTAGCAGATTTTGGTATCTCATGCTTAGAATCTCAATGTGGAAGTGCGAAGGGATTCACCGGAACTTACCGCTGGATGGCACCTGAAATGATCAAAGAAAAACACCACACTAAGAAAGTTGATGTTTATAGCTTTGGCATTGTCTTATGGGAGCTCTTAACTGCATTGACACCATTTGATAACATGACTCCTGAACAGGCAGCATTTGCAGTCTGCCAGAAGAATGCAAGACCACCGCTGCCTTCTGCTTGCCCGCAGGCATTTCGTCATCTGATCAAGAGATGCTGGTCGAGAAATCCCAACAAGCGACCACATTTTGATGAGATCGTTTCAATTTTGGAAACTTATGCGGAGTGTTACAATGAAGATCCAGATTTTTTTGGTCATTACGTCCCCTCGTCTAGATATACTGCTTTGCAATGCTTACCAAAATGGTTTGACCAAGAAGAAAAGGAGGTTCAGCAAGATGGGAAAGCTGAAGTTGATAAACTAAATTCTACAACCCCCTTGATTGTCAACCTTGAACCCGTTCGAGAGGAACAAGTACAAAATGCTGTGACGTTCTTTTCATCTCCCAGCGACCCATCTCCAGCAGCAGTTGCATCTAGTGCGAGTCGAGATGGAGGGGTGAAGTCACCTTCAGACAATCAGCTACAAGCTTCAACCCAAACTTTACAGCCTTCAGCTTCTGCACCCACTGCACCCACCACGATTGTTTCATCTACGGGTTACATTGAAGGGAACAAAATAATTCCAAGAATGAAATCCTGGATACGCATGTTGGTAAACGATGGACATGAAGAGATTGTAAAAGGAGAGAGTTCCATTTCAAGTTTGGTAGAAGAAGCAGCTGCTGCTGCGAAAGCAGCTTCAGAAGTGGCAATTGATCTAGCAAGAGCAAGCCAGGATATGTTGAACTCAAAATATCAAGCTTTTGATGTTGAAGCACCTTCAGAAGTGGCAATTGATCTAGCAAGAGCAAGCCAGGATATTTTGAAAGGCGATTCAGAACGAACAAATTATTCTGGCGAAACAGCATCTGGTAACAACAACAATCCTTTACACAAATTGTAG 1764 42.97 MRNLNWFKPISINGKPGRRLSLGEYQRAVSWSKYLVSSGAEIKGEGEEEWSADMSQLFIGFKFATGRHSRIYRGVYKQRDVAIKLISQPEEDENLANFLENQFISEVALLFRLRHPNIITCLFMAASNAFSILSREEQGKMTSVFPENDKDNFIAACKKPPVFCIITEYMTGGSLRKYLHQQEPHSVPLNLVLKLALEISRGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSACPQAFRHLIKRCWSRNPNKRPHFDEIVSILETYAECYNEDPDFFGHYVPSSRYTALQCLPKWFDQEEKEVQQDGKAEVDKLNSTTPLIVNLEPVREEQVQNAVTFFSSPSDPSPAAVASSASRDGGVKSPSDNQLQASTQTLQPSASAPTAPTTIVSSTGYIEGNKIIPRMKSWIRMLVNDGHEEIVKGESSISSLVEEAAAAAKAASEVAIDLARASQDMLNSKYQAFDVEAPSEVAIDLARASQDILKGDSERTNYSGETASGNNNNPLHKL 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26321588 26327318 + CcPI632755_01g014560.1 Cco01g1456 170318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1456 587 CDD STKc_MAP3K-like 66 343 - -
Cco01g1456 587 Pfam Protein tyrosine and serine/threonine kinase 152 343 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g1456 587 Gene3D Transferase(Phosphotransferase) domain 1 151 350 - -
Cco01g1456 587 MobiDBLite consensus disorder prediction 437 468 - -
Cco01g1456 587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g1456 587 SUPERFAMILY Protein kinase-like (PK-like) 48 353 IPR011009 -
Cco01g1456 587 PRINTS Tyrosine kinase catalytic domain signature 270 292 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g1456 587 PRINTS Tyrosine kinase catalytic domain signature 251 261 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g1456 587 PRINTS Tyrosine kinase catalytic domain signature 167 180 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g1456 587 PRINTS Tyrosine kinase catalytic domain signature 205 223 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g1456 587 PRINTS Tyrosine kinase catalytic domain signature 314 336 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g1456 587 Gene3D Phosphorylase Kinase; domain 1 44 135 - -
Cco01g1456 587 ProSiteProfiles Protein kinase domain profile. 57 347 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g1456 587 Pfam Peroxisomal membrane protein PEX14-like, central 470 539 IPR054154 -
Cco01g1456 587 MobiDBLite consensus disorder prediction 418 468 - -
Cco01g1456 587 MobiDBLite consensus disorder prediction 565 587 - -
Cco01g1456 587 PANTHER SERINE-THREONINE PROTEIN KINASE 55 344 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cco01g1456 587 SMART serkin_6 57 347 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1456 Cco-Chr1:26321588 Cco04g1941 Cco-Chr4:33738205 4.80E-107 dispersed
Cco04g1874 Cco-Chr4:33355169 Cco01g1456 Cco-Chr1:26321588 3.80E-18 dispersed
Cco05g0564 Cco-Chr5:4580767 Cco01g1456 Cco-Chr1:26321588 6.10E-18 transposed
Cco05g1791 Cco-Chr5:26608999 Cco01g1456 Cco-Chr1:26321588 6.40E-30 transposed
Cco01g1456 Cco-Chr1:26321588 Cco10g1412 Cco-Chr10:27205296 7.30E-55 wgd
Cco01g1456 Cco-Chr1:26321588 Cco06g1901 Cco-Chr6:29201020 2.60E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86520 PF07714 PK_Tyr_Ser-Thr 3.50E-56 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1456 - - - 0.0