Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1460 ATGGCTGGTCCTGGGGAAAACCTACATCCTGAACTTCGTGGTTTAAAGGGATTGAATCAGCAAGCTGAGGATAAAAACCAGCATGTTGACAAAGAGGGTGGCCTGAGTGGTGGTGAAAGGGACATGGCTCCGGTTACCGGCAATTCCATTCACAGGTCAGGTTCTCGTCCACAGCTAGACCTCAGCAAAGCAGAAATTCAGGGAAATTTTGAGGAGAGAGACCCCACAATTCTGTTGCCTAACCAATCTGATGATATATCTCACCTTGCTCTTGACATCGGCGGATCTCTCATCAAATTGGTGTACTTTTCAAGACATGAAGATCAATCGGTTGATGATAAGAGAAAGAGAAGCATGAAGCAGAGGCTGGGGTTATCAAATGGTAATAGAAGAAGCTATCCAGTTCTTGGTGGGAGGCTTCATTTTGTAAAGTTTGAGACAAGCAAGATTAACGAGTGTTTAGACTTCATCCATTCGAAGCAGCTACATCGTGGTGCTTGCAAAGATTTACCTCATTGGCATTCAGACTCAGCAAATGAAAATGCCGTCATTAAGGCTACAGGTGGAGGGGCATACAAGTTTGCAGATCTTTTCAAAGAAAGACTTGGAGTAAGCCTTGATAAAGAAGATGAAATGGATTGTCTTGTGGCTGGAGCAAATTTTCTGCTAAAGGCAATACGTCACGAAGCTTTCACTCATATGGAGGGCAAAAAAGAGTTTGTGCAACTTGACCATAACGAATTGTTTCCTTATCTACTTGTTAACATTGGATCTGGTGTCAGCATGATCAAGGTTGATGGCGATGGGAAATTTCAGAGAGTTAGTGGGACAAATGTTGGAGGGGGCACTTACTGGGGCTTAGGAAGATTGTTAACAAAATGTAATAGCTTTGATGAGTTGTTAGAGCTTAGTCAAAAGGGAGATAATGGCACAATTGACATGCTTGTTGGGGACATATATGGTGGCATGGATTACTCCAAGATTGGTCTCTCTGCGTCAACAATTGCATCTAGTTTTGGCAAGACCATCTCAGTGAACAAGGAGCTTAAAGACTACAGACCAGAAGATATCTCATTGTCTCTCTTGCGAATGATCTCATATAACATTGGACAGATTTCGTACTTGAATGCTCTACGGTTTGGACTTAAGAGAATATTTTTTGGAGGATTCTTTATCAGGGGACATGCATATACCATGGATACAATTTCTTTCGCAGTTCAATTCTGGTCGAAAGGAGAAGCACAGGCAATGTTCTTGCGTCATGAGGGGTTCTTAGGAGCCTTAGGTGCATTCATGAGCTATGAAAAGCATGGTCTTGATGATCTATTGGCCCATCAGTTAGTCGAAAGGTTTCCTATGGGTGCACCATACACGGGAGGGAAAGTTCATGGGCCTCCACTTGGTGATTTGAATGAAAAGATTTCTTGGATGGAGAAATTTTTGCAGAAGAGAACAGAAATTACTGCACCTGTCCCTATGGCTCCCCCTGGAACAACTGGACTTGGAGGCTTTGAAGTCCCTTTATCCAAAGGAGAAACCCTGCGATCTGATGCAAGTGCCCTAAATGTCGGTGTACTTCACCTGGTACCCACTTTGGAGGTGTTTCCACTGTTAGCTGATCCAAAGACATATGAACCTAATACAATTGATCTCTCTGATCACAGTGAGTTGGAGTACTGGTTCACCGTGCTTTCAGAGCATCTAGCAGACCTTGTTGATAAGGCTGTTGCAAGTGAAGGTGGGACTGATGATGCCAAGAGAAGGGGTGATGCATTTGCTCGGGCATTTTCTGCCCACTTGAGGAGGTTGATGGAGGAACCTACGGCATATGGAAAGTTGGGTTTGGCTAATCTTCTGGAACTGAGGGAAGAGTGCCTGAGGGAATTCCAATTTTTTGATGCCTATAGAAGCATAAAGCAGAGGGAGAATGAGGCATCACTTGCTGTGTTACCTGACCTGCTGTTGGAACTTGATAGCATGAATGAGGAAGCAAGACTGCTTACCCTAATTGAAGGTGTTCTTGCTGCAAACATTTTTGATTGGGGCTCTCGTGCTTGTGTTGATCTCTATCACAAGGGGACAATTATTGAGATTTACCGAATGAGTCGCAACAAGATGCAGAGGCCATGGCGGGTTGATGATTTTGATGTCTTCAGAGAGAGAATGTTAGGATCTGGGGACGAGAGACCCCTTCCACATAAAAGAGCTCTTCTCTTTGTGGACAATTCAGGTGCTGATGTTGTTCTAGGGATGCTTCCCTTGGCAAGGGAACTCCTCCGACGTGGAACAGAAGTTGTTTTAGTTGCAAACTCTCTTCCTGCCCTAAATGATGTTACCGCAATGGAGCTTCCTGATATTGTAGCTGAGGCTGCCAAGCATTGTGACATACTACGTAGAGCTGCCGAAGCAGGGGGACTGATTGTGGATGCCATGATCGACTCTGCGGATGGTTCTAAAGAGAGATCATCTTTTGTTCCCTTGATGGTTGTTGAAAATGGGTGTGGTAGTCCATGTATAGATCTAAGGCAGGTCAGCTCTGAGTTGGCTGCCGCAGCTAAAGATGCTGATTTGGTTATCTTGGAAGGGATGGGAAGAGCCCTTCACACCAACTTCAATGCTAAGTTTAAATGTGATGCTTTGAAGCTTGCCATGGTGAAAAATCAGAGGCTGGCAGAAAAATTGATCAAAGGAAACATATACGATTACCACGCGCGAAAGTCAAGCTTTGATGACCCATCTTTGCGCGACCACACCCACGAGCAGCAGATAAGACCACGCACCCCGGCGACCTGTCGCTACGCACCGCACCCATGCCTTCAGCTTATTTTCGATGGTAGCACACTGGGCTTCACGACCAGCTCTGTGACGGTGATATTTTTCTCAGCGGCGGAGCTAGCCTGCGATGGTTCAGATCTACAAGCTCGGGCGTTTTTGAACACCAACCAGCAGGGCTCGGAGCCCTTTTTGGTGTTCAGAATCACAGACACTAGTAAAATGGATTCTCCAATCAGGGAAGAGGCAATCAATCCATTAACAGATGAAATTAAGGATTCTGGTGTAGATAACTTCAATGATGGGAGCAAAGAGATGTCTGAAAAGAGGTCTGAGACACGTGAGCGGAAGAAGAGCAAGTATTTGTCCTTTCCGTATATAAACTGGGGGCAGAAAGTTATGCCAGCTGAAACAGAAGATATTAAGGTTCTTAAAATTTCTGGTGAAGGCGAGGATGAAAATGCAGTTGAGGGCCAGAATGAAACCCCATTGCTATCTAAATGCGGTGGCAAGTTCTGGAAGAAATGGTACAGGAATATCACCAGTGGGAGCGATGTAACCGATAATCAAGACTTGATGAGTGCATCACCAGCTGAGTTTCTCTCTGAGCTTCATTTTACTGCTGTAAATTGTCTTTATCCAAATGAAAACAATAACTTTGATGCAGTTGCTCAGTTCTTCTCCAGATTTAGAATTTTGATGTTTCATGATGAATCTGTTAATGGTGGTCAAAATGAGGCAATGGCTGCGGATTTGTTTTTTCTTGGGGGAAAGGTGTCAGAGGTTAAGCATCCTTCTTCGGCTGTTAAATCTGGGATCAAGAAAAGAAAAAGTCAGGCAAGTTCTATTACGAAAGTGGAAGGGATGAAATCCAAACCAGTCTCTGGTGATGTGGATTTGACTGGAAAAGATGAAACAAGTCCTGCAGGAGATGCACCGGAAAAAAGCCCTCCGACTTCCAATGTTAAATCAAAAAAAGATAAAGAAAGCTTGGGGAGAGATTTTGTCGATAATCCAGACTTGATGAGTGCATTGCCAGCTGAGTTTCTCTCTGAGCTTCATTTTACTGCTGTAAATTGTCTATATCCAAACGAAAATAACAACTTTGAAACGGTTGCTCAGTTCTTCTCCATATTTAGAATTTTAATGTTTTTGGGGGAAGATGTGTCAGAGGTTAAGCAGCACCCTTCTTCGGCTGCAAAATCTGGGATCAAGAAAAGAAAAAGTCAGGCAAGTTCTATTACGAAAATGGAAGAGACAAAATCCAAACCAGTCTCCGGTGAAGTGGATTTGTCTGGAAAAGCTGAAATAAGTCCTGCAGTAGATGCACTGAAAAAAAGCCCTCTGACTGTTAAATCAAAAAAAGATAAAGAAAGCTTTGGGAGATTGAAGACTAAATCCCTTTCTGCCTTGTCAGATGTGAACATAAACCTTTCTTCCTGTGGCTTACTCACAAAAGACTCACCAGAGGTTGGATCCCTTTCACCCAATGGTTTACCAAAGCGAAGGAAGAGAAAGAACAATGGATCACATCCCCAAAGTAAACCAACAACGGAGATACCAGATTTAAATGGAAGTAGTACCGTATCTGGCTTGTTGGTGGAAGATCAGCAGGCTTCCCAACAGAAGTCTGCGCCAAAGAAGAGAAGGAAGCTTGGGGCTGCTAAGGAGCATTCAAAGGCGTCTACTGAATTCATAAATGTAAATGTGAATGACAGCAATAAACCTG 4501 43.79 MAGPGENLHPELRGLKGLNQQAEDKNQHVDKEGGLSGGERDMAPVTGNSIHRSGSRPQLDLSKAEIQGNFEERDPTILLPNQSDDISHLALDIGGSLIKLVYFSRHEDQSVDDKRKRSMKQRLGLSNGNRRSYPVLGGRLHFVKFETSKINECLDFIHSKQLHRGACKDLPHWHSDSANENAVIKATGGGAYKFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGKKEFVQLDHNELFPYLLVNIGSGVSMIKVDGDGKFQRVSGTNVGGGTYWGLGRLLTKCNSFDELLELSQKGDNGTIDMLVGDIYGGMDYSKIGLSASTIASSFGKTISVNKELKDYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGALGAFMSYEKHGLDDLLAHQLVERFPMGAPYTGGKVHGPPLGDLNEKISWMEKFLQKRTEITAPVPMAPPGTTGLGGFEVPLSKGETLRSDASALNVGVLHLVPTLEVFPLLADPKTYEPNTIDLSDHSELEYWFTVLSEHLADLVDKAVASEGGTDDAKRRGDAFARAFSAHLRRLMEEPTAYGKLGLANLLELREECLREFQFFDAYRSIKQRENEASLAVLPDLLLELDSMNEEARLLTLIEGVLAANIFDWGSRACVDLYHKGTIIEIYRMSRNKMQRPWRVDDFDVFRERMLGSGDERPLPHKRALLFVDNSGADVVLGMLPLARELLRRGTEVVLVANSLPALNDVTAMELPDIVAEAAKHCDILRRAAEAGGLIVDAMIDSADGSKERSSFVPLMVVENGCGSPCIDLRQVSSELAAAAKDADLVILEGMGRALHTNFNAKFKCDALKLAMVKNQRLAEKLIKGNIYDYHARKSSFDDPSLRDHTHEQQIRPRTPATCRYAPHPCLQLIFDGSTLGFTTSSVTVIFFSAAELACDGSDLQARAFLNTNQQGSEPFLVFRITDTSKMDSPIREEAINPLTDEIKDSGVDNFNDGSKEMSEKRSETRERKKSKYLSFPYINWGQKVMPAETEDIKVLKISGEGEDENAVEGQNETPLLSKCGGKFWKKWYRNITSGSDVTDNQDLMSASPAEFLSELHFTAVNCLYPNENNNFDAVAQFFSRFRILMFHDESVNGGQNEAMAADLFFLGGKVSEVKHPSSAVKSGIKKRKSQASSITKVEGMKSKPVSGDVDLTGKDETSPAGDAPEKSPPTSNVKSKKDKESLGRDFVDNPDLMSALPAEFLSELHFTAVNCLYPNENNNFETVAQFFSIFRILMFLGEDVSEVKQHPSSAAKSGIKKRKSQASSITKMEETKSKPVSGEVDLSGKAEISPAVDALKKSPLTVKSKKDKESFGRLKTKSLSALSDVNINLSSCGLLTKDSPEVGSLSPNGLPKRRKRKNNGSHPQSKPTTEIPDLNGSSTVSGLLVEDQQASQQKSAPKKRRKLGAAKEHSKASTEFINVNVNDSNKP 1500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26370643 26388059 - CcPI632755_01g014600.1 Cco01g1460 170322

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1460 1500 MobiDBLite consensus disorder prediction 1015 1038 - -
Cco01g1460 1500 PANTHER PANTOTHENATE KINASE 59 903 IPR004567 GO:0004594(InterPro)|GO:0004594(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0015937(PANTHER)|GO:0015937(InterPro)
Cco01g1460 1500 FunFam Pantothenate kinase 2 546 632 - -
Cco01g1460 1500 FunFam Pantothenate kinase 2 80 242 - -
Cco01g1460 1500 MobiDBLite consensus disorder prediction 1327 1344 - -
Cco01g1460 1500 MobiDBLite consensus disorder prediction 1190 1259 - -
Cco01g1460 1500 Gene3D Uncharacterised protein PF01937, DUF89, domain 3 711 905 - -
Cco01g1460 1500 Pfam Fumble 88 432 IPR004567 GO:0004594(InterPro)|GO:0005524(InterPro)|GO:0015937(InterPro)
Cco01g1460 1500 SUPERFAMILY Actin-like ATPase domain 201 434 IPR043129 -
Cco01g1460 1500 MobiDBLite consensus disorder prediction 1486 1500 - -
Cco01g1460 1500 MobiDBLite consensus disorder prediction 1319 1355 - -
Cco01g1460 1500 MobiDBLite consensus disorder prediction 1435 1465 - -
Cco01g1460 1500 Gene3D - 310 423 - -
Cco01g1460 1500 Coils Coil 12 32 - -
Cco01g1460 1500 SUPERFAMILY Actin-like ATPase domain 86 229 IPR043129 -
Cco01g1460 1500 MobiDBLite consensus disorder prediction 1 60 - -
Cco01g1460 1500 Pfam Damage-control phosphatase ARMT1-like domain 584 894 IPR002791 -
Cco01g1460 1500 FunFam Pantothenate kinase 1 88 228 - -
Cco01g1460 1500 FunFam Pantothenate kinase 2 229 414 - -
Cco01g1460 1500 NCBIfam type II pantothenate kinase 88 433 IPR004567 GO:0004594(InterPro)|GO:0005524(InterPro)|GO:0015937(InterPro)
Cco01g1460 1500 SUPERFAMILY AF1104-like 525 901 IPR036075 -
Cco01g1460 1500 MobiDBLite consensus disorder prediction 23 37 - -
Cco01g1460 1500 MobiDBLite consensus disorder prediction 1244 1259 - -
Cco01g1460 1500 MobiDBLite consensus disorder prediction 1196 1212 - -
Cco01g1460 1500 Gene3D - 80 242 - -
Cco01g1460 1500 MobiDBLite consensus disorder prediction 1409 1500 - -
Cco01g1460 1500 Gene3D - 547 631 IPR035073 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1460 K24265 - - csv:101203117 1701.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0345 Cco-Chr2:3162634 Cco01g1460 Cco-Chr1:26370643 5.90E-55 transposed
Cco01g1460 Cco-Chr1:26370643 Cco05g2806 Cco-Chr5:35781025 6.90E-134 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g757 Blo04g00734 . . . . . . . . Cmo18g00128 . . . . . . . . . . . . . . . . . . . . . . Cone16ag0101 Cone13ag0142 . Lsi02g00371 Csa01g00852 Chy12g01267 Cme12g01694 . . . Bda14g00811 . Bpe15g00638 Bma03g00781 . . . . . Cma18g00170 . Car18g00161 Cpe09g01025 . Bhi08g01609 Tan05g2008 . Lac10g0449 Hepe07g2227 . . Cla01g01300 Cam01g1429 Cec01g1464 Cco01g1460 Clacu01g1366 Cmu01g1272 Cre01g1264 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005817 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 3 1 39