Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1462 ATGGAGGAAACATTTTTTCCGTTTCGTGGGATTAAGAATGATATAAAAGGAAGACTTCTGTGCTACAGACAGGATTGGACTGGAGGCTTTCGCGCTGGTATCAGGATCTTGGCCCCAACAACGTATATATTCTTTGCTTCAGCAATTCCGGTTATATCGTTTGGGGAGCAGCTAGAAAGGAATACATACGGGACTCTAACTGCCGTACAAACTCTAGCATCAACAGCACTTTGTGGCATTATCCACTCAGTCTTTGGGGGACAGCCTCTGCTTATCCTTGGTGTTGCTGAACCAACTGTTTTGATGTATACGTTCATGTTCGACTTTGCAAAGGACCGAAAGGAACTGGGACAGGAACTATTCTTAGCCTGGACAGGATGGGTATGTGTATGGACAGGCATCTTGCTTTTCTTGCTTGCGGTGTTGGGTGCATGCTCCCTGATCAATAGGTTCACACGTCTTGCTGGCGAATTGTTTGGTCTGCTAATTGCCATGCTCTTCATGCAGCAGGCAATACGTGGTGTTGTGGAGGAATTCGGCATACCCCAAAGGGAAAATCCTAATCAGGTGGCGCTCCAACCTCCTTGGCGCTTTGGCAATGGAATGTTTGCATTAGTGCTGTCCTTCGGGCTTCTGCTAACTGCCCTTAAAAGCCGCAAGGCTAGATCATGGCGCTATGGGACTGGTTGCCTACGTGGCATTATTGCTGATTATGGAGTTCCACTTATGGTGCTCGTATGGACAGCCTTATCTTACATTCCAGTCAACAATGTCCCACTTGGGATCCCAAGAAGGCTTTTCAGTCCCAATCCATGGTCTCAGGGTGCCTACTCAAATTGGACGGTTATAAAGGAAATGTTGAGAGTGCCTCCATTGTATATAGTTGGAGCATTCATACCAGCAACCATGATAGCAGTTCTTTACTACTTTGATCACAGTGTTGCATCTCAGCTTGCCCAACAGAAAGAGTTTAATTTGAAAAAACCAGCTTCATATCATTATGATCTTCTCCTCCTAGGTTTCCTTGTTATCCTGTGTGGACTTATAGGCATACCACCTTCTAATGGTGTAATTCCTCAGTCTCCGATGCACACAAAAAGCTTAGCTACCCTAAAACATCAGCTTTTGCGGAGCAAGCTGGTAGCAGCAGCGCGACAAAGTTTCCGTAAAAATTCGAACTTGAGTCAATTATACCGGAACATGCAAGAGGCATATAATGAGATTCAGACTCCTTTAATTTATCAAAATCCACCAGCTGTGGGGCTGAAGGAGTTGAAGGATTCCACGATCCAACTAGCTTCAAGAACTGGCTACATTGATGCACCTGTTGACGAAACTGTTTTCGATGTGGACAAAGATATTGATGATCTTCTGCCAGTAGAAGTTAAAGAACAACGTCTCAGCAATTTGCTTCAGGCAGTAATGGTTGGTGGTTGTGTTGCTGCTATGCCTCTTTTAAAGAAGATCCCGACTTCGGTTCTTTGGGGCTACTTCGCTTTCATGGCAATCGAGAGCTTACCCGGAAATCAATTTTGGGAAAGGATTTTACTTCTTTTCACTGCTCCGAACCGAAGATACAAGGTGCTGGAGGAATATCATGCAACCTTTCTAGAAACTGTCCCCTTCAAAACAATTGCCACCTTCACCTTGTTTCAGACAGTATATCTGCTGATGTGTTTTGGATTAACCTGGATTCCAATCGCTGGTGTTCTTTTTCCGCTGTTGATCATGCTTCTTGTCCCTGTGCGCCAGTATTTGCTCGCCAGGTTCTTCAAAGGTGCTCATCTTCAGGACTTGGATGCTGCTGAATATGATGAAGCTCCTGCAGTCACTTTTAATCCGTCATTCGAAGATCGAATGGGAAGAACTCCCAACATTGATGACGGTGAAATACTCGACGAGATGATCACAAGAAGCCGTGGCGAGATTCGATGTACACAAAGTTCAAAAGTGACAAGCTCATCCCCAACTTCTCTAGAGGGCATCAAACCTGCCTACAGCCCACAGATACCACAGAAACTTTACAGTCCACGGATCATTGAGCTGAGAAGAGAGAGAAGTTCTCTATCTCCTGGAAAAGGACTTGAGTTTAAGCTAAATTCTAGTCCTAGTCCTAGTGAAGAACCAGGGCCAGGACCTTCTTTTAGAAATTAG 2154 44.89 MEETFFPFRGIKNDIKGRLLCYRQDWTGGFRAGIRILAPTTYIFFASAIPVISFGEQLERNTYGTLTAVQTLASTALCGIIHSVFGGQPLLILGVAEPTVLMYTFMFDFAKDRKELGQELFLAWTGWVCVWTGILLFLLAVLGACSLINRFTRLAGELFGLLIAMLFMQQAIRGVVEEFGIPQRENPNQVALQPPWRFGNGMFALVLSFGLLLTALKSRKARSWRYGTGCLRGIIADYGVPLMVLVWTALSYIPVNNVPLGIPRRLFSPNPWSQGAYSNWTVIKEMLRVPPLYIVGAFIPATMIAVLYYFDHSVASQLAQQKEFNLKKPASYHYDLLLLGFLVILCGLIGIPPSNGVIPQSPMHTKSLATLKHQLLRSKLVAAARQSFRKNSNLSQLYRNMQEAYNEIQTPLIYQNPPAVGLKELKDSTIQLASRTGYIDAPVDETVFDVDKDIDDLLPVEVKEQRLSNLLQAVMVGGCVAAMPLLKKIPTSVLWGYFAFMAIESLPGNQFWERILLLFTAPNRRYKVLEEYHATFLETVPFKTIATFTLFQTVYLLMCFGLTWIPIAGVLFPLLIMLLVPVRQYLLARFFKGAHLQDLDAAEYDEAPAVTFNPSFEDRMGRTPNIDDGEILDEMITRSRGEIRCTQSSKVTSSSPTSLEGIKPAYSPQIPQKLYSPRIIELRRERSSLSPGKGLEFKLNSSPSPSEEPGPGPSFRN 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26439814 26444401 + CcPI632755_01g014620.1 Cco01g1462 170324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1462 717 MobiDBLite consensus disorder prediction 644 665 - -
Cco01g1462 717 Pfam HCO3- transporter integral membrane domain 7 180 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Cco01g1462 717 Pfam HCO3- transporter integral membrane domain 460 602 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Cco01g1462 717 Pfam HCO3- transporter integral membrane domain 202 372 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Cco01g1462 717 MobiDBLite consensus disorder prediction 685 717 - -
Cco01g1462 717 FunFam probable boron transporter 2 18 60 - -
Cco01g1462 717 MobiDBLite consensus disorder prediction 644 662 - -
Cco01g1462 717 Gene3D Helical hairpin bin 18 60 - -
Cco01g1462 717 PANTHER ANION EXCHANGE PROTEIN 6 638 IPR003020 GO:0005452(InterPro)|GO:0005886(PANTHER)|GO:0006820(InterPro)|GO:0016020(InterPro)|GO:0022857(PANTHER)|GO:0050801(PANTHER)|GO:0055085(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1462 Cco-Chr1:26439814 Cco10g1160 Cco-Chr10:24152850 0.00E+00 dispersed
Cco01g1462 Cco-Chr1:26439814 Cco07g1363 Cco-Chr7:27693852 1.30E-215 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1462 K24194 - csv:101203606 1367.06