Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1463 ATGCAGAGCTCTGCAATCACCTTCTCGCCTTCTCTTCCTCTTCTCAAGCCTCGCAGGCCTCATACTTCATCCTTCAGCTCTGGATGTAACTCAATTCGGTTATCTTCTTCGTCTTCCTCAAATTCCAGAGATCTCGGAGACCTGAACAATGTTGGCCTCCCTTCCTCTTGGCCCCGCCGATCTTGGACTCTGTCTTCGTCTCCTTTTTCCTCCTCGAAACTCCGCCCATGGACCGGTGTGCCCTCGCTTGCTTCGGATTCCGATGCGAGTCATTTCAAGGTTCAGGCTACTGCGGTGCCGGATAGCTCAGGGGAGGCCGCGAGTGCTGGCGGAAGCCTAATGAAAACGTTGGAGCTCGGGTTGTTGTTTGGCCTCTGGTACCTTTTCAACATCTACTTTAACATCTACAACAAGCAGGTTCTCAAGGTGTATCCGTTTCCTGTGACTGTCACTGCAGTTCAATTTGCCGTAGGCACTGTACTTGTTCTTCTCATGTGGGGACTTAATCTCTACAAAAGACCTAAGATTAGTGGTGCTCAGCTTGCTGCTATTCTGCCACTGGCATTTGTTCACACATTGGGAAATCTTTTCACAAATATGAGTCTTGGGAAAGTGGCGGTATCGTTCACTCACACAATCAAAGCCATGGAGCCATTTTTTTCAGTTGTCCTGTCAGCAATGTTTCTTGGAGAGACTCCTACTCCCTGGGTTGTTGCGTCCCTTCTGCCAATCGTAGGTGGTGTTGCATTGGCATCTGCCACTGAGGCCTCCTTCAACTGGGCTGGGTTTTGGAGTGCAATGGCATCCAATGTGACTAATCAATCTCGTAATGTCCTTAGCAAAAAGGTCATGGTGAAAAAAGAGGACTCAATTGACAACATCACCCTCTTTTCAATTATAACAGTCATGTCCTTCTTCTTACTATCCCCTGTGGCCATCTTCATGGAAGGTGTCAAGTTCACTCCTGCATACCTTCAATCAGCTGGATTGAACATGAATCAACTATACATTAGGTCTCTTCTTGCTGCCCTTTGTTTCCATGCTTACCAACAGGTTTCTTACATGATATTGCAAAGAGTATCGCCTGTTACCCACTCGGTCGGCAATTGTGTAAAGCGTGTTGTGGTCATCGTGAGCTCTGTTATCTTCTTCCAAACACCTGTTTCTCCAATCAACTCTCTTGGCACTGGAATAGCTCTTGCTGGGGTTTTCCTTTATTCGAGGGTTAAGCGCATCAAAGCTAAGCCGAAGACAGCTTAA 1260 47.3 MQSSAITFSPSLPLLKPRRPHTSSFSSGCNSIRLSSSSSSNSRDLGDLNNVGLPSSWPRRSWTLSSSPFSSSKLRPWTGVPSLASDSDASHFKVQATAVPDSSGEAASAGGSLMKTLELGLLFGLWYLFNIYFNIYNKQVLKVYPFPVTVTAVQFAVGTVLVLLMWGLNLYKRPKISGAQLAAILPLAFVHTLGNLFTNMSLGKVAVSFTHTIKAMEPFFSVVLSAMFLGETPTPWVVASLLPIVGGVALASATEASFNWAGFWSAMASNVTNQSRNVLSKKVMVKKEDSIDNITLFSIITVMSFFLLSPVAIFMEGVKFTPAYLQSAGLNMNQLYIRSLLAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPINSLGTGIALAGVFLYSRVKRIKAKPKTA 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26450301 26453454 - CcPI632755_01g014630.1 Cco01g1463 170325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1463 419 PANTHER SOLUTE CARRIER FAMILY 35 111 408 IPR050186 GO:0005794(PANTHER)|GO:0015297(PANTHER)
Cco01g1463 419 MobiDBLite consensus disorder prediction 1 47 - -
Cco01g1463 419 MobiDBLite consensus disorder prediction 20 47 - -
Cco01g1463 419 SUPERFAMILY Multidrug resistance efflux transporter EmrE 162 252 - -
Cco01g1463 419 Pfam Triose-phosphate Transporter family 118 407 IPR004853 -
Cco01g1463 419 SUPERFAMILY Multidrug resistance efflux transporter EmrE 331 410 - -
Cco01g1463 419 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 117 417 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1463 Cco-Chr1:26450301 Cco05g0293 Cco-Chr5:2349812 1.50E-62 dispersed
Cco01g1463 Cco-Chr1:26450301 Cco09g2120 Cco-Chr9:35597766 3.10E-116 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1463 K15283 - csv:101203848 712.605