Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1464 ATGCATTCGTTAAGCTTCAAGGTTGTAGGTGATTTTAATGCGGGATTGAGGATGAATTTTCCGAGACGAGGAAGCTTTTGCTTTCCGGAAATGGAGGTCGGGGCAGTGAGGTGTTTTGGGGGCCGTCGAGCATTTGGAAGAACTTGTAGGATTGTAGCATGTGCTTCGGAGAGAAATGGTGATGGTGGCGGAGGACAGAGCCAGAGCGCCAGTACGAGTCGGAGTCGTTCGTTTCTATCCCGCAGTGAAACTTATGCACTACTGAAGCAGCAATTGGAGGTTGCTGCCAAGTCCGAGGATTATGAAGAAGCTGCAAGGATACGGGACTCATTAAAATTATTTGAAGAGGAAGAGCCAGTTTTGCGTATTCGAAGACTGATGAAGGAGGCTATTTCTAGTGAGAGGTTTGAGGATGCTGCTAAATATCGTGATGAACTGAATGAAATTGCCCCTCACTGTCTTCTGAAATGTGCAAGTGATGCAACAACATTGGGTATCAGGGTACAAGTTAAGAGTGTATACATAGAAGGCCGAAGCCAACCTTCGAAGAACCAGTACTTTTTTGCATACCGAATAAGAATTACCAATAATTCAAACCGTCCAGTTCAACTTCTCAGAAGACATTGGATTATCACCGATGCAAATGGGAAAACAGAAAATGTCTGGGGTGTTGGTGTTATTGGTGAACAACCAGTTATACTTCCTGGGACTGGGTTTGAATATTCATCAGCATGCCCATTAAGTACTGCTAACGGCAGAATGGAAGGTGACTTTGAAATGAAGTACGTCGACCGAATGGGTGAACAATCATTTAACGTTTTAATGCTTCTTCTTCCTCACGCTGCTGCGTTAAATGATTGGTTCAATATGGGCTTGGAGCTCTCTCTTGACCAGGGCAAGCCGGCAGGAGTGGATGATCAATGCAGCAGTGAGTCGACGCATCCTATATATGCATTTGCTCCTCTCTGCCCTCACATTCTGCGTTTTTTAACTGCATGGGAGTTTGTTCCAGTCCCTTTAAATACCAGGGAGACCAGCAAGATGGAAGATGGACCTTGGAGTTTGCTAACAGGATCCCCCAAAAAGTCTTGGCAGCCTATCATGACGGATGATACAACAACTTCCAATTACTGGGTCAATTGGAGGGTTCTGCTTTGCATTATATGGGTTCTGCTTACACTGAGTTTTGCATTGTTCCTGATATGGAAATATGAGGCCCGTGGGAATAAGGAATGTGACAGAGAAGAAACTCAGAAAGAAGAAGCTGGAGCTTTGTATGACGATGAAACATGGCGGCCTTGTTTTAAGGGAATACATCCTGCTTGGCTGTTGGCCTTCAGAGTGTTGGCTTTCTGTGTACTCTTGGTGCTCCTCATAGTCACTGCTATTGTTGATGGTGGCGATATATTTTACTTCTACACTCAGTGGACTTTTACTTCAATCACCATTTATTTTGGGCTTGGATCACTACTCTCCATTAATGGCTGCTACCAGTATCAGAAGAAAGTTAGTGGTGAGAAAGTGGATAATGTGGAGGGAGATGCAGAACAAGGCACTTCTGCAGGTGGAAATGGTTCAATTACTTCAAATACAGAGAAAAATCCATCCCTTCGTGAAGAACATTGTCTTGTACGTCAACGTGCAGGATTTTGGGGTTATGTCTTTCAGATTATCTTCCAGATGAATGCAGGTGCTGTTATGCTGACAGATTGCGTCTTTTGGTTCATAATCGTTCCGTTTCTCACCATTAAAGATTACAACCTTAATTTCTTGATAATAAATATGCACACAATCAATGCTGTTTTCTTGCTAGGAGATACCGCTTTGAACTCTTTGCGATTCCCATGGTTTCGAATCGGATATTTCTTCCTCTGGACAGTCGTTTACGTAATCTTTCAATGGATAGTTCACGCTTGTGTGAGATTATGGTGGCCATATCCCTTTCTTGATCTCTCATCTTCATATGCTCCTCTTTGGTACTTATCCGTGGCTCTAATGCACATTCCTTGCTATGGCATCTTCACACTAATCATGAAGCTGAAGCACCATGTATTTTCGACACGGTGCCCACAATCCTATCAATGTACGAGACATGAAAATCTTGATAGGAAAGAAAGGAGCAAAAGATTCAAGGGATTGGATCCCTGCCTTGCCAGCATGAAAATTGATAGATTAGATTCTTTGCATTGGAAAGACAATGTTCTCTAA 2208 43.16 MHSLSFKVVGDFNAGLRMNFPRRGSFCFPEMEVGAVRCFGGRRAFGRTCRIVACASERNGDGGGGQSQSASTSRSRSFLSRSETYALLKQQLEVAAKSEDYEEAARIRDSLKLFEEEEPVLRIRRLMKEAISSERFEDAAKYRDELNEIAPHCLLKCASDATTLGIRVQVKSVYIEGRSQPSKNQYFFAYRIRITNNSNRPVQLLRRHWIITDANGKTENVWGVGVIGEQPVILPGTGFEYSSACPLSTANGRMEGDFEMKYVDRMGEQSFNVLMLLLPHAAALNDWFNMGLELSLDQGKPAGVDDQCSSESTHPIYAFAPLCPHILRFLTAWEFVPVPLNTRETSKMEDGPWSLLTGSPKKSWQPIMTDDTTTSNYWVNWRVLLCIIWVLLTLSFALFLIWKYEARGNKECDREETQKEEAGALYDDETWRPCFKGIHPAWLLAFRVLAFCVLLVLLIVTAIVDGGDIFYFYTQWTFTSITIYFGLGSLLSINGCYQYQKKVSGEKVDNVEGDAEQGTSAGGNGSITSNTEKNPSLREEHCLVRQRAGFWGYVFQIIFQMNAGAVMLTDCVFWFIIVPFLTIKDYNLNFLIINMHTINAVFLLGDTALNSLRFPWFRIGYFFLWTVVYVIFQWIVHACVRLWWPYPFLDLSSSYAPLWYLSVALMHIPCYGIFTLIMKLKHHVFSTRCPQSYQCTRHENLDRKERSKRFKGLDPCLASMKIDRLDSLHWKDNVL 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26462706 26475770 + CcPI632755_01g014640.1 Cco01g1464 170326

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1464 735 ProSiteProfiles UVR domain profile. 117 152 IPR001943 GO:0005515(InterPro)
Cco01g1464 735 ProSiteProfiles UVR domain profile. 82 117 IPR001943 GO:0005515(InterPro)
Cco01g1464 735 Pfam ApaG domain 178 261 IPR007474 -
Cco01g1464 735 SUPERFAMILY ApaG-like 162 264 IPR036767 -
Cco01g1464 735 SUPERFAMILY C-terminal UvrC-binding domain of UvrB 82 115 IPR036876 -
Cco01g1464 735 PANTHER OS05G0170800 PROTEIN 1 274 IPR050718 -
Cco01g1464 735 Gene3D ApaG domain 156 284 IPR036767 -
Cco01g1464 735 Pfam UvrB/uvrC motif 122 149 IPR001943 GO:0005515(InterPro)
Cco01g1464 735 Pfam UvrB/uvrC motif 88 116 IPR001943 GO:0005515(InterPro)
Cco01g1464 735 ProSiteProfiles ApaG domain profile. 160 287 IPR007474 -
Cco01g1464 735 MobiDBLite consensus disorder prediction 517 533 - -
Cco01g1464 735 MobiDBLite consensus disorder prediction 513 534 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1464 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1962 Cco-Chr8:30434078 Cco01g1464 Cco-Chr1:26462706 7.70E-97 transposed
Cco10g1165 Cco-Chr10:24228136 Cco01g1464 Cco-Chr1:26462706 9.60E-54 transposed
Cco01g1464 Cco-Chr1:26462706 Cco10g1388 Cco-Chr10:26948958 1.40E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g764 . . Bda06g00606 . . . . Bma12g01041 Cmo13g00912 Cmo18g00133 . . . . . Cpe20g00248 . . . . . . . . . . . . . . . Cone2ag0912 Cone16ag0096 . Cone19ag0143 Lsi02g00379 Csa01g00858 . Cme12g01688 . . . . Bpe07g00844 . . . Sed08g2518 . . Cma13g00882 Cma18g00175 Car13g00722 Car18g00165 . . Bhi08g01620 Tan05g2000 Cmetu12g1450 Lac10g0457 Hepe07g2221 . . Cla01g01305 . . Cco01g1464 Clacu01g1370 Cmu01g1277 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000506 3 9 1 2 2 3 5 3 3 3 3 3 4 3 3 4 3 4 4 3 3 3 3 3 3 3 3 11 8 4 112