Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1487 ATGTTGAACTGGGCCTATTCATTTTTGGGCCGTGAAGCCCAAATTAGAAGTCTCTCTTCTCTGGCAGCCTCAAAGATTGTTCGTCAAATTATCGCTGGTATTTGCTTTTCATCTCCATCAAAGCAAAAAATGCGGCTTCAAGTGAACAAAGAAATCCCTTTAATTCTACACCCAATTCAAAACTCCCTCCATTTTTTCAAACCCATCTCTCCAACTTTCATTTCCTTTCGACAAAAGCAGATCAAACGCTCCCAATTCAATCGGCTTAGAGTTCAATTCCACCAAACCCAATCTTCAAACCCTAAAAAACGAACCCAAGACGACGGAATTCCATCAGACGACGTCAAAATCCTCGCCAAATTCAAATCTCGCCACAATTTCATCAGAGTTATTGAAGTTTCCCGAAGAGCGGAGCACCCATTTGCAGGTTCTAGATTGCTTCTTCTCGATGGCCCTGGCAACATTCACAGCATCTCATTCCTTTTCAAATCACTAACAAACACTTACTTCGATGTCTTCGCCACATTGCCGCCGATTCTACCCCCGGGACCCATCGGAATCCTCGGATTCGGCGCCGGCTCCGCCGCTCGATCGATCCTAAAGCTATATCCTGAGGTAGTGGTTCATGGGTGGGAGCTCGATCCGTCTGTAATCGCTGTTGGGAGGGAATTTTTCGGCGTTTCGAAGCTGGAAAAAGAGTACCCAGATAGGCTTTTTATCTACATTGGGAATGCTCTGAAAGCCAATGTGAAAGGGGGATTTGCAGGGATTTTGGTTGATCTGTTTAGTGAAGGGAGTTTGATTCCTGAACTTGAGGATCCGAATACATGGAAAATGCTCGAAAGGTGTATGATGAAAGACGGGAGAGTGATGGTGAACGTTGGGGGCAGCTGTGTGGAGGCTGAGGATATTAGGAGAGATGGGAAAGTTGTAATGGAACAAACTTTGAAGGCAATGCATCAAGTTTATGGAAAGAAATTGTGGGTTTTGAGACTTGGGAATGGTGAAGATGACAGTTCCTTAGCTCTCACTGGCGACTTGCCTGACATTGATGCTTGGAAGAAGTTGCTTCCAAGGTCTCTGAGGTTCTATCCTGATATGTGGACTCTGTACAATGCAACCCAAAAGATCAAAATGGCATCAACAACAACAAACAGCCATTATTATAGCCCTTGTGCAGCTTGCAAATTCCTAAGAAGAAAATGCTTAGAAGGATGTGTTTTTGCACCCTATTTTCCACCTGAAGAACCCCAAAAATTTGCCAATGTCCACAAGGTATTCGGAGCGAGTAACGTTGCGAAGCTCCTGAACGACGTTCTTCCTCATCAACGACAAGATGCCGTCGTTTCGCTCGCCTATGAAGCCGAGGCGAGAATCAGAGATCCTGTTTATGGCTGTGTTGGAGCAATTTCTTTCCTCCAAAAACAGGTCCAAAGGCTCCAAAAAGAACTTGATGCTGCTAAAGCTTGCCTTTTTCTCTACTCTTGCACTGATTTCTCAACTCCCCTTTTGCCTCCTCACCCTCAGATTATTACTTCTCCTCATCCACTGATTTGGAATAATAATCTTAATATTAATAATAATAATCATGATATTACTAATTCTTCTATGTATTTTAATGGAGGAATTTGA 1632 43.57 MLNWAYSFLGREAQIRSLSSLAASKIVRQIIAGICFSSPSKQKMRLQVNKEIPLILHPIQNSLHFFKPISPTFISFRQKQIKRSQFNRLRVQFHQTQSSNPKKRTQDDGIPSDDVKILAKFKSRHNFIRVIEVSRRAEHPFAGSRLLLLDGPGNIHSISFLFKSLTNTYFDVFATLPPILPPGPIGILGFGAGSAARSILKLYPEVVVHGWELDPSVIAVGREFFGVSKLEKEYPDRLFIYIGNALKANVKGGFAGILVDLFSEGSLIPELEDPNTWKMLERCMMKDGRVMVNVGGSCVEAEDIRRDGKVVMEQTLKAMHQVYGKKLWVLRLGNGEDDSSLALTGDLPDIDAWKKLLPRSLRFYPDMWTLYNATQKIKMASTTTNSHYYSPCAACKFLRRKCLEGCVFAPYFPPEEPQKFANVHKVFGASNVAKLLNDVLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQVQRLQKELDAAKACLFLYSCTDFSTPLLPPHPQIITSPHPLIWNNNLNINNNNHDITNSSMYFNGGI 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26631782 26636942 - CcPI632755_01g014870.1 Cco01g1487 170349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1487 543 Coils Coil 470 490 - -
Cco01g1487 543 Pfam Lateral organ boundaries (LOB) domain 391 488 IPR004883 -
Cco01g1487 543 ProSiteProfiles LOB domain profile. 390 491 IPR004883 -
Cco01g1487 543 Gene3D Vaccinia Virus protein VP39 125 350 IPR029063 -
Cco01g1487 543 FunFam S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 125 363 - -
Cco01g1487 543 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 116 325 IPR029063 -
Cco01g1487 543 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 390 495 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1487 Cco-Chr1:26631782 Cco11g1139 Cco-Chr11:22185943 2.50E-41 dispersed
Cco01g1487 Cco-Chr1:26631782 Cco10g1378 Cco-Chr10:26834204 4.20E-49 wgd
Cco01g1487 Cco-Chr1:26631782 Cco06g1928 Cco-Chr6:29543816 7.00E-52 wgd
Cco01g1487 Cco-Chr1:26631782 Cco09g2134 Cco-Chr9:35716222 4.80E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58627 PF03195 LOB 5.40E-41 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1487 - - - 0.0