Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1487 ATGTTGAACTGGGCCTATTCATTTTTGGGCCGTGAAGCCCAAATTAGAAGTCTCTCTTCTCTGGCAGCCTCAAAGATTGTTCGTCAAATTATCGCTGGTATTTGCTTTTCATCTCCATCAAAGCAAAAAATGCGGCTTCAAGTGAACAAAGAAATCCCTTTAATTCTACACCCAATTCAAAACTCCCTCCATTTTTTCAAACCCATCTCTCCAACTTTCATTTCCTTTCGACAAAAGCAGATCAAACGCTCCCAATTCAATCGGCTTAGAGTTCAATTCCACCAAACCCAATCTTCAAACCCTAAAAAACGAACCCAAGACGACGGAATTCCATCAGACGACGTCAAAATCCTCGCCAAATTCAAATCTCGCCACAATTTCATCAGAGTTATTGAAGTTTCCCGAAGAGCGGAGCACCCATTTGCAGGTTCTAGATTGCTTCTTCTCGATGGCCCTGGCAACATTCACAGCATCTCATTCCTTTTCAAATCACTAACAAACACTTACTTCGATGTCTTCGCCACATTGCCGCCGATTCTACCCCCGGGACCCATCGGAATCCTCGGATTCGGCGCCGGCTCCGCCGCTCGATCGATCCTAAAGCTATATCCTGAGGTAGTGGTTCATGGGTGGGAGCTCGATCCGTCTGTAATCGCTGTTGGGAGGGAATTTTTCGGCGTTTCGAAGCTGGAAAAAGAGTACCCAGATAGGCTTTTTATCTACATTGGGAATGCTCTGAAAGCCAATGTGAAAGGGGGATTTGCAGGGATTTTGGTTGATCTGTTTAGTGAAGGGAGTTTGATTCCTGAACTTGAGGATCCGAATACATGGAAAATGCTCGAAAGGTGTATGATGAAAGACGGGAGAGTGATGGTGAACGTTGGGGGCAGCTGTGTGGAGGCTGAGGATATTAGGAGAGATGGGAAAGTTGTAATGGAACAAACTTTGAAGGCAATGCATCAAGTTTATGGAAAGAAATTGTGGGTTTTGAGACTTGGGAATGGTGAAGATGACAGTTCCTTAGCTCTCACTGGCGACTTGCCTGACATTGATGCTTGGAAGAAGTTGCTTCCAAGGTCTCTGAGGTTCTATCCTGATATGTGGACTCTGTACAATGCAACCCAAAAGATCAAAATGGCATCAACAACAACAAACAGCCATTATTATAGCCCTTGTGCAGCTTGCAAATTCCTAAGAAGAAAATGCTTAGAAGGATGTGTTTTTGCACCCTATTTTCCACCTGAAGAACCCCAAAAATTTGCCAATGTCCACAAGGTATTCGGAGCGAGTAACGTTGCGAAGCTCCTGAACGACGTTCTTCCTCATCAACGACAAGATGCCGTCGTTTCGCTCGCCTATGAAGCCGAGGCGAGAATCAGAGATCCTGTTTATGGCTGTGTTGGAGCAATTTCTTTCCTCCAAAAACAGGTCCAAAGGCTCCAAAAAGAACTTGATGCTGCTAAAGCTTGCCTTTTTCTCTACTCTTGCACTGATTTCTCAACTCCCCTTTTGCCTCCTCACCCTCAGATTATTACTTCTCCTCATCCACTGATTTGGAATAATAATCTTAATATTAATAATAATAATCATGATATTACTAATTCTTCTATGTATTTTAATGGAGGAATTTGA 1632 43.57 MLNWAYSFLGREAQIRSLSSLAASKIVRQIIAGICFSSPSKQKMRLQVNKEIPLILHPIQNSLHFFKPISPTFISFRQKQIKRSQFNRLRVQFHQTQSSNPKKRTQDDGIPSDDVKILAKFKSRHNFIRVIEVSRRAEHPFAGSRLLLLDGPGNIHSISFLFKSLTNTYFDVFATLPPILPPGPIGILGFGAGSAARSILKLYPEVVVHGWELDPSVIAVGREFFGVSKLEKEYPDRLFIYIGNALKANVKGGFAGILVDLFSEGSLIPELEDPNTWKMLERCMMKDGRVMVNVGGSCVEAEDIRRDGKVVMEQTLKAMHQVYGKKLWVLRLGNGEDDSSLALTGDLPDIDAWKKLLPRSLRFYPDMWTLYNATQKIKMASTTTNSHYYSPCAACKFLRRKCLEGCVFAPYFPPEEPQKFANVHKVFGASNVAKLLNDVLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQVQRLQKELDAAKACLFLYSCTDFSTPLLPPHPQIITSPHPLIWNNNLNINNNNHDITNSSMYFNGGI 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26631782 26636942 - CcPI632755_01g014870.1 Cco01g1487 170349

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1487 543 Coils Coil 470 490 - -
Cco01g1487 543 Pfam Lateral organ boundaries (LOB) domain 391 488 IPR004883 -
Cco01g1487 543 ProSiteProfiles LOB domain profile. 390 491 IPR004883 -
Cco01g1487 543 Gene3D Vaccinia Virus protein VP39 125 350 IPR029063 -
Cco01g1487 543 FunFam S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 125 363 - -
Cco01g1487 543 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 116 325 IPR029063 -
Cco01g1487 543 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 390 495 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1487 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1487 Cco-Chr1:26631782 Cco11g1139 Cco-Chr11:22185943 2.50E-41 dispersed
Cco01g1487 Cco-Chr1:26631782 Cco10g1378 Cco-Chr10:26834204 4.20E-49 wgd
Cco01g1487 Cco-Chr1:26631782 Cco06g1928 Cco-Chr6:29543816 7.00E-52 wgd
Cco01g1487 Cco-Chr1:26631782 Cco09g2134 Cco-Chr9:35716222 4.80E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g805 Blo04g00724 . . . . . . . Cmo13g00897 . . . . . . Cpe20g00260 . . . . . . . . . . . . . . . . Cone16ag0080 . . Lsi02g00403 Csa01g00876 Chy12g01246 Cme12g01669 . . . . . Bpe15g00648 Bma03g00774 . Sed08g2531 . . Cma13g00865 . Car13g00708 . . . Bhi08g01651 Tan05g1979 Cmetu12g1847 Lac10g0482 Hepe07g2204 . . Cla01g01324 Cam01g1405 Cec01g1437 Cco01g1487 Clacu01g1389 Cmu01g1298 Cre01g1242 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco11g1139 . 1 218 AS2 family AT1G65620 66.4 1.8e-69 259.2
Cco02g1441 . 2 110 AS2 family AT1G65620 79.8 2.1e-46 182.6
Cco06g1928 . 59 234 AS2 family AT1G65620 54.0 2.1e-46 182.6
Cco10g1378 . 21 132 AS2 family AT1G65620 72.3 2.8e-43 172.2
Cco09g2134 . 1 117 AS2 family AT1G65620 69.2 1.1e-42 170.2
Cco01g1487 . 379 494 AS2 family AT1G65620 69.8 2.9e-40 162.2
Cco02g1441 . 1 122 AS2 family AT5G66870 85.2 3.5e-56 215.7
Cco11g1139 . 5 112 AS2 family AT5G66870 77.8 1.2e-43 174.1
Cco01g1487 . 390 507 AS2 family AT5G66870 65.3 1.8e-39 160.2
Cco06g1928 . 57 169 AS2 family AT5G66870 68.1 2.3e-39 159.8
Cco09g2134 . 1 121 AS2 family AT5G66870 62.8 6.7e-39 158.3
Cco10g1378 . 27 132 AS2 family AT5G66870 67.9 8.7e-39 157.9
Cco02g1441 . 4 118 AS2 family AT2G23660 68.7 8.9e-44 174.5
Cco11g1139 . 6 112 AS2 family AT2G23660 69.2 7.8e-40 161.4
Cco06g1928 . 64 169 AS2 family AT2G23660 64.2 1.9e-38 156.8
Cco10g1378 . 27 142 AS2 family AT2G23660 58.6 2.8e-37 152.9
Cco01g1487 . 390 506 AS2 family AT2G23660 63.0 6.2e-37 151.8
Cco09g2134 . 4 127 AS2 family AT3G27650 79.4 6.4e-54 207.2
Cco10g1378 . 15 133 AS2 family AT3G27650 80.7 3.2e-53 204.9
Cco06g1928 . 60 170 AS2 family AT3G27650 78.4 2.0e-47 185.7
Cco01g1487 . 377 495 AS2 family AT3G27650 67.2 1.1e-42 169.9
Cco11g1139 . 3 112 AS2 family AT3G27650 68.2 9.6e-42 166.8
Cco02g1441 . 4 112 AS2 family AT3G27650 66.1 9.9e-39 156.8
Cco06g1928 . 59 169 AS2 family AT5G63090 93.7 4.2e-57 218.0
Cco10g1378 . 21 144 AS2 family AT5G63090 77.4 2.0e-51 199.1
Cco09g2134 . 1 113 AS2 family AT5G63090 86.0 1.3e-50 196.4
Cco01g1487 . 388 517 AS2 family AT5G63090 70.0 1.2e-48 189.9
Cco11g1139 . 3 122 AS2 family AT5G63090 70.8 2.2e-45 179.1
Cco02g1441 . 2 110 AS2 family AT5G63090 68.8 3.0e-39 158.7
Cco01g0954 . 15 126 AS2 family AT5G63090 64.3 2.6e-38 155.6
Cco02g1984 . 14 117 AS2 family AT5G63090 67.3 1.3e-37 153.3
Cco07g0478 . 4 106 AS2 family AT5G63090 69.9 1.3e-37 153.3
Cco07g0478 . 3 114 AS2 family AT2G30130 92.0 2.7e-54 208.8
Cco02g2066 . 2 136 AS2 family AT2G30130 71.9 3.6e-51 198.4
Cco01g0954 . 10 130 AS2 family AT2G30130 69.4 1.0e-45 180.3
Cco02g1984 . 10 125 AS2 family AT2G30130 72.4 1.5e-44 176.4
Cco09g2460 . 21 122 AS2 family AT2G30130 73.5 6.4e-40 161.0
Cco06g1928 . 64 167 AS2 family AT2G30130 68.3 1.3e-37 153.3
Cco03g0247 . 37 141 AS2 family AT2G30130 67.6 1.7e-37 152.9
Cco10g1378 . 27 139 AS2 family AT2G30130 61.9 8.6e-37 150.6
Cco11g1139 . 7 109 AS2 family AT2G30130 67.0 8.6e-37 150.6
Cco01g0954 . 4 171 AS2 family AT1G31320 73.5 3.5e-66 248.1
Cco02g1984 . 1 171 AS2 family AT1G31320 72.3 9.9e-61 229.9
Cco07g0478 . 2 132 AS2 family AT1G31320 66.2 2.9e-44 175.3
Cco09g2460 . 21 127 AS2 family AT1G31320 72.9 2.1e-42 169.1
Cco02g2066 . 6 122 AS2 family AT1G31320 65.8 3.0e-41 165.2
Cco03g0247 . 37 146 AS2 family AT1G31320 64.5 1.5e-37 152.9
Cco06g1928 . 65 176 AS2 family AT1G31320 62.5 7.7e-37 150.6
Cco03g0247 . 34 202 AS2 family AT2G28500 56.8 5.8e-48 188.0
Cco03g0246 . 13 128 AS2 family AT2G28500 69.8 1.3e-44 176.8
Cco02g2238 . 30 195 AS2 family AT2G28500 53.3 1.6e-42 169.9
Cco02g1504 . 27 118 AS2 family AT2G28500 88.0 3.7e-42 168.7
Cco02g1984 . 11 122 AS2 family AT2G28500 65.2 4.6e-37 151.8
Cco07g0478 . 5 115 AS2 family AT2G28500 64.9 6.0e-37 151.4
Cco02g2238 . 4 195 AS2 family AT1G07900 60.7 2.0e-46 182.6
Cco02g1504 . 27 181 AS2 family AT1G07900 68.8 7.1e-44 174.1
Cco03g0247 . 28 202 AS2 family AT1G07900 54.5 7.1e-44 174.1
Cco03g0246 . 13 128 AS2 family AT1G07900 66.4 4.3e-41 164.9
Cco02g1984 . 6 171 AS2 family AT1G16530 57.1 3.9e-46 181.4
Cco01g0954 . 4 171 AS2 family AT1G16530 53.3 7.6e-42 167.2
Cco02g2066 . 2 160 AS2 family AT1G16530 51.3 3.5e-39 158.3
Cco07g0478 . 5 110 AS2 family AT1G16530 68.2 2.5e-37 152.1
Cco09g2460 . 21 121 AS2 family AT1G16530 69.6 5.6e-37 151.0
Cco07g0518 . 1 157 AS2 family AT2G30340 66.5 9.7e-55 210.7
Cco11g0593 . 13 157 AS2 family AT2G30340 69.6 1.8e-53 206.5
Cco07g0518 . 32 157 AS2 family AT2G40470 82.5 5.5e-55 211.1
Cco11g0593 . 30 154 AS2 family AT2G40470 77.6 8.2e-51 197.2
Cco02g1984 . 12 122 AS2 family AT2G40470 65.8 2.9e-40 162.2
Cco01g0954 . 16 126 AS2 family AT2G40470 63.1 8.0e-38 154.1
Cco11g0618 . 1 164 AS2 family AT3G11090 59.8 1.2e-47 186.4
Cco07g0095 . 1 117 AS2 family AT2G42440 72.6 7.0e-44 174.5
Cco09g0780 . 9 118 AS2 family AT2G42440 71.8 3.3e-41 165.6
Cco07g0094 . 25 132 AS2 family AT2G42440 70.4 4.0e-39 158.7
Cco06g0035 . 29 138 AS2 family AT2G42440 65.2 2.9e-37 152.5
Cco09g0780 . 4 126 AS2 family AT3G58190 75.2 5.5e-48 188.0
Cco07g0095 . 4 117 AS2 family AT3G58190 78.9 6.1e-47 184.5
Cco07g0094 . 25 132 AS2 family AT3G58190 71.3 1.3e-41 166.8
Cco06g0035 . 29 127 AS2 family AT3G58190 74.7 5.5e-40 161.4
Cco07g0347 . 6 115 AS2 family AT3G58190 65.5 1.3e-36 150.2
Cco07g0095 . 1 171 AS2 family AT2G31310 51.1 2.4e-39 159.1
Cco07g0094 . 25 235 AS2 family AT2G42430 55.2 1.0e-55 213.8
Cco06g0035 . 29 131 AS2 family AT2G42430 74.8 9.5e-41 164.1
Cco07g0095 . 3 94 AS2 family AT2G42430 80.4 6.8e-39 157.9
Cco09g0780 . 12 114 AS2 family AT2G42430 70.9 7.5e-38 154.5
Cco05g0262 . 758 862 AS2 family AT2G42430 65.7 2.9e-37 152.5
Cco06g0035 . 29 222 AS2 family AT4G00220 63.6 2.9e-60 228.8
Cco05g0262 . 760 923 AS2 family AT4G00220 53.6 7.2e-43 171.0
Cco06g0036 . 28 114 AS2 family AT4G00220 79.3 5.9e-37 151.4
Cco06g0035 . 29 240 AS2 family AT2G45420 69.0 2.9e-72 268.9
Cco05g0262 . 760 916 AS2 family AT2G45420 58.8 1.2e-49 193.7
Cco07g0094 . 26 128 AS2 family AT2G45420 77.7 4.1e-42 168.7
Cco09g0780 . 12 118 AS2 family AT2G45420 70.1 2.3e-40 162.9
Cco10g1573 . 37 126 AS2 family AT2G45420 80.0 1.1e-37 154.1
Cco06g0036 . 28 114 AS2 family AT2G45420 80.5 5.2e-37 151.8
Cco07g0095 . 7 95 AS2 family AT2G45420 76.4 1.2e-36 150.6
Cco10g1573 . 37 150 AS2 family AT3G03760 78.9 2.7e-44 176.0
Cco06g0035 . 29 130 AS2 family AT3G03760 80.4 2.4e-40 162.9
Cco07g0094 . 25 127 AS2 family AT3G03760 74.8 6.4e-38 154.8
Cco06g0035 . 29 139 AS2 family AT4G00210 73.0 1.4e-43 173.3
Cco05g0262 . 758 874 AS2 family AT4G00210 63.2 1.5e-40 163.3
Cco09g0780 . 12 116 AS2 family AT4G00210 65.7 3.4e-37 152.1
Cco06g0035 . 29 224 AS2 family AT2G45410 51.0 1.8e-47 186.0
Cco05g0262 . 757 879 AS2 family AT2G45410 62.9 8.8e-42 167.2
Cco07g0094 . 26 128 AS2 family AT2G45410 67.0 1.7e-37 152.9
Cco07g0347 . 9 154 AS2 family AT5G06080 58.4 7.4e-43 170.6
Cco09g0063 . 35 142 AS2 family AT3G13850 75.9 6.5e-43 171.4
Cco05g1355 . 1 166 AS2 family AT1G68510 64.4 4.3e-59 224.9
Cco06g1678 . 1 159 AS2 family AT1G68510 61.8 1.1e-54 210.3
Cco05g2535 . 1 171 AS2 family AT1G68510 58.9 4.3e-51 198.4
Cco04g1501 . 1 104 AS2 family AT1G68510 64.4 7.7e-40 161.0
Cco05g2313 . 1 121 AS2 family AT1G68510 59.3 9.4e-38 154.1
Cco05g1355 . 1 302 AS2 family AT1G67100 50.2 2.2e-71 265.8
Cco06g1678 . 1 140 AS2 family AT1G67100 72.5 1.3e-60 229.9
Cco05g2535 . 1 132 AS2 family AT1G67100 68.6 5.1e-52 201.4
Cco04g1501 . 1 110 AS2 family AT1G67100 67.3 1.8e-44 176.4
Cco05g2313 . 1 110 AS2 family AT1G67100 62.7 6.5e-39 157.9
Cco05g1355 . 1 302 AS2 family AT3G02550 55.3 1.9e-79 292.7
Cco06g1678 . 1 163 AS2 family AT3G02550 69.5 5.0e-64 241.5
Cco05g2535 . 1 141 AS2 family AT3G02550 63.4 1.9e-47 186.4
Cco04g1501 . 1 136 AS2 family AT3G02550 55.1 5.1e-40 161.8
Cco04g1501 . 1 235 AS2 family AT5G67420 58.8 9.0e-71 263.8
Cco05g2313 . 1 117 AS2 family AT5G67420 70.1 1.5e-46 183.3
Cco05g1355 . 3 112 AS2 family AT5G67420 68.2 1.1e-44 177.2
Cco06g1678 . 3 112 AS2 family AT5G67420 61.8 2.2e-40 162.9
Cco05g2535 . 3 113 AS2 family AT5G67420 62.5 4.1e-39 158.7
Cco04g1501 . 1 234 AS2 family AT3G49940 60.5 5.2e-71 264.6
Cco05g1355 . 3 157 AS2 family AT3G49940 52.9 4.9e-45 178.3
Cco06g1678 . 3 112 AS2 family AT3G49940 62.7 1.6e-40 163.3
Cco05g2535 . 3 113 AS2 family AT3G49940 62.5 7.6e-38 154.5
Cco04g1501 . 1 235 AS2 family AT4G37540 57.1 8.9e-68 253.8
Cco05g1355 . 3 175 AS2 family AT4G37540 50.8 3.8e-42 168.7
Cco06g1678 . 3 113 AS2 family AT4G37540 63.1 4.6e-40 161.8
Cco05g2535 . 3 126 AS2 family AT4G37540 56.5 1.6e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012584 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58627 PF03195 LOB 5.40E-41 No_clan Cco TF