Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1492 ATGAGGTTGTATGTGTATGTATTGGAGGCCAAGGACCTCCATGTGAAGGACTCGTTTGTGAAGCTTCGAGTTGGGAGGCGTAAGGCCAAGACGAGGATTATGAGAAATAGCCCAAATCCTATTTGGAATGAGGAGTTCATTTTCAAGTTTCGTGATGTTGATGATGAACTAGTTGTGTCTATTTATGAGCACAGTGATGAATCCAACTTCTTCCATGCCTCATCTGGTTTGATTGGTCAGGTTCGGATACCTATATGGACCGTTGCTGCTGAGGATTCACAGACCTTGCGACCGACTTGGTTTGATATACGAAGGTCCAAAACCGAGAAATTCATCAATGAAGTTGCCGGGAAAGTGCTTCTTATTGTCTCATTACATGGGAAAGGCAATGTACTCAATCAACCAAGTGTTACTAATACTAATCCTAAACCATTGGAAGATTCATCTGCAACTTCGCAGGATTTGATTGGTGCCAAATCTTCATCCAACAAGGCTATCAAATGGAAGCCTAACAAGAAGACTATAGTGAGTCGTTTGGAGAGGTTGTTCCATAAGAGTGATGAGGATACAAGAACAGATAATTCTTCAGAGTCATCAAGTGACATGTCTGATACTGAAGAGCGCGTAAATGGGGATCCCTCTGAATCTACCTTTGATGAAGCTATTGAGGTACTGCAGTCAAGAAGCAATGAACAGGAAATGCCAGAAAACCTATCCGGTGGCGTTCTTGTCGATCAGATGTATGTAGTTTCACCAGATGATATGAACAAACTTCTCTTTTCCCCAGATTCACAGTTCAGGAGAGAACTAGCAGAACATCAGGGAATAACAAATTTAGAAGAGGGAACTTGGTCTTGGAAACAAGGGGATGTACCTTGTCTATCACGGATTGTGTCTTACAAAAAACCCGCAACAAAGATTGTTGGAGCTATTAATGCTACGGAGGAGCAAACTTACATTAAAGGGGATGGATGGGAATTTGCTGTCTTAGTAAATGTAAGTACACCTGAGGTTCCATTTGGTAATGCATTCAATGTTGAGTTACTTTACAAGATAATGCCTGGCCCTGAGCTAATTTCTGGAGAAGAGACTTCTCAATTTGTAGTTTCTTGGGGTATAAACTTCCTCCATAGTACAATGATGAAAGGCATGATTGAGAAAGGGGCTCGACAGGGACTGGAGGAAAATTTTGTCCAGTTCACTAACTTGCTGTCTCAACATCTTAAAATTCCAAATTCTACTGAGCTATCGAACAAGGATCACGTGTTGTCAACTTCTGAGAATGACCGCCATTCGGATTTTGAATTGGCCAGCCAGTACTTCTGGAACTTCACTGTATTTTCTTCCATGTTCTTCCTGCTATATGTTCTTGTGCATATCATTCTTTCTAAGCCAAAAATAAAGCAAGGCTTGGAGTTCACTGGTATGGATCTGCCAGATAGTTTAGGAGAACTTGTTACTAGTGGAATTTTAGTCCTTCAGTTGGAACGTGTTTATAACATGGTCTCACATTTCATTCAAGCTAGGTTAAAAAGAGGAAGTGACCATCGGGTCAAAGGCCAAGGAGATGGATGGATCCTAACCATAGCTCTTATAGAAGGAGTGAACATTTCATCCTTGGATTCTTCCGGATCCTCCGACCCTTGTGTAGTTTTCACATGCAATGGTAAAAAAAGAACTAGCTCCGTTGAGCTTCAAACTCATGAGCCTCAATGGAATGAGGTACTCGAGTTTGATGCCATGAAGGAACCACCATCAGTTTTATATGTGGAGGTCTTTGACTTTGATGGTCCATTTGACCAGGCTACTTCACTTGGGCATGCAGAGATTAATTTCCTAAAATATAAATCAACTGAACTTGCAGATATATGGGTTCCCCTTGAGGGGAAGCTTGCTCAGTCTTCTCAGTCGAAGCTACACTTGAGAATCTTCTTAGATAATACAGATGGAGTGGAAACAATAAGACGATACTTGTCCATGAAGGGAAAGGAGGTTGGGAAGAAGCTGCATCCTAGGTCACCTTACAGGAACTCGACATTTCAAAAGCTTTTTGGTTTTCCAGAAGACGAGTTTCTTGTCAGCGAGTTCACGTGCTCCTTGAAAAGAAAAATGCTTCTCCAGGGGAGATTATTTCTATCTGCCAGAGTCATTGGGTTTTATGCCAATTTCTTTGGACAAAAAACAAAATTTTTCTTTCTCTGGGAGGACATTGAAGATATACAACTACTCCACCCTTCCCTTTCCTCTCTGGGTAGCCCATCACTAGTCATTGTTCTTAAAAAAGGTCGAGGTCTTGACGCAAGTCACGGTGCGAAGTCTCAAGATGAACAGGGCAGGCTCAGATTTTACCTCCAATCATTTGTCTCATTCAATGTAGCCAGCAGGACGATTATGGGTATGTGGAGAACAAGAAAATCAGCCCTTGATCAGAAAGCACAAGTATCTGAAACGTTGAATAATTCCGAAGAAAGGTCGGTTTTGGTGGAGGATGTGGAATGTTTTTTGGATGTAGAAGATACAAAGATGTCAAAGTTGTATGTTGCAGAACTTCCTCTAAATGTAAAATCATTGATGGATTTTTTTGAGGGTGGCAAACTAGAGCACAAGGTGATGGAAAAATCTGGTTGTCTAAATTACACGACGACGCCATGGGAATTCGTGAAACCCGGTATCCTCGAAAGATGCATTTCTTACCAATTCAATCATGACATATCAATCTTTGAAGGCAAAGTGACATGCATTCAGCAAAAAATCCCCATTGCAGGCAGTGATGAAGACGAATGGGTACTAAACGAGGTCATGAGGTTGCACGATGTCCCGTTTGATGACTGTTTTCGTGTTCATTTCAGGTACTGTTTTGAGGATTCTGAGATAGCTAAAAATGCTTGCAAATGCAAGGCTTTCTATGGAATCACTTGGCTTAAAAGCACGGAGCTTCAGCAGAAGATCACCCAGAACATAGCTGACGAGTTTGGACATCGACTTAAACTCATATTTGAATTGATTGAGAGGGAAATTCTTATTGCAACCCAATCTTAA 3039 41.36 MRLYVYVLEAKDLHVKDSFVKLRVGRRKAKTRIMRNSPNPIWNEEFIFKFRDVDDELVVSIYEHSDESNFFHASSGLIGQVRIPIWTVAAEDSQTLRPTWFDIRRSKTEKFINEVAGKVLLIVSLHGKGNVLNQPSVTNTNPKPLEDSSATSQDLIGAKSSSNKAIKWKPNKKTIVSRLERLFHKSDEDTRTDNSSESSSDMSDTEERVNGDPSESTFDEAIEVLQSRSNEQEMPENLSGGVLVDQMYVVSPDDMNKLLFSPDSQFRRELAEHQGITNLEEGTWSWKQGDVPCLSRIVSYKKPATKIVGAINATEEQTYIKGDGWEFAVLVNVSTPEVPFGNAFNVELLYKIMPGPELISGEETSQFVVSWGINFLHSTMMKGMIEKGARQGLEENFVQFTNLLSQHLKIPNSTELSNKDHVLSTSENDRHSDFELASQYFWNFTVFSSMFFLLYVLVHIILSKPKIKQGLEFTGMDLPDSLGELVTSGILVLQLERVYNMVSHFIQARLKRGSDHRVKGQGDGWILTIALIEGVNISSLDSSGSSDPCVVFTCNGKKRTSSVELQTHEPQWNEVLEFDAMKEPPSVLYVEVFDFDGPFDQATSLGHAEINFLKYKSTELADIWVPLEGKLAQSSQSKLHLRIFLDNTDGVETIRRYLSMKGKEVGKKLHPRSPYRNSTFQKLFGFPEDEFLVSEFTCSLKRKMLLQGRLFLSARVIGFYANFFGQKTKFFFLWEDIEDIQLLHPSLSSLGSPSLVIVLKKGRGLDASHGAKSQDEQGRLRFYLQSFVSFNVASRTIMGMWRTRKSALDQKAQVSETLNNSEERSVLVEDVECFLDVEDTKMSKLYVAELPLNVKSLMDFFEGGKLEHKVMEKSGCLNYTTTPWEFVKPGILERCISYQFNHDISIFEGKVTCIQQKIPIAGSDEDEWVLNEVMRLHDVPFDDCFRVHFRYCFEDSEIAKNACKCKAFYGITWLKSTELQQKITQNIADEFGHRLKLIFELIEREILIATQS 1012
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26691100 26695584 + CcPI632755_01g014920.1 Cco01g1492 170354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1492 1012 Gene3D C2 domain 508 645 IPR035892 -
Cco01g1492 1012 Pfam GRAM domain 679 754 IPR004182 -
Cco01g1492 1012 SMART gram2001c 678 744 IPR004182 -
Cco01g1492 1012 Gene3D - 676 803 IPR011993 -
Cco01g1492 1012 PANTHER BNAA05G37250D PROTEIN 1 1007 IPR044511 -
Cco01g1492 1012 SMART C2_3c 2 97 IPR000008 -
Cco01g1492 1012 SMART C2_3c 526 624 IPR000008 -
Cco01g1492 1012 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 133 IPR035892 -
Cco01g1492 1012 ProSiteProfiles C2 domain profile. 507 625 IPR000008 -
Cco01g1492 1012 Coils Coil 804 824 - -
Cco01g1492 1012 ProSiteProfiles VASt domain profile. 841 1006 IPR031968 -
Cco01g1492 1012 MobiDBLite consensus disorder prediction 131 158 - -
Cco01g1492 1012 CDD C2 3 103 - -
Cco01g1492 1012 ProSiteProfiles VASt domain profile. 239 412 IPR031968 -
Cco01g1492 1012 ProSiteProfiles C2 domain profile. 1 101 IPR000008 -
Cco01g1492 1012 MobiDBLite consensus disorder prediction 186 217 - -
Cco01g1492 1012 Pfam VAD1 Analog of StAR-related lipid transfer domain 243 392 IPR031968 -
Cco01g1492 1012 Pfam VAD1 Analog of StAR-related lipid transfer domain 847 989 IPR031968 -
Cco01g1492 1012 CDD C2 527 627 - -
Cco01g1492 1012 MobiDBLite consensus disorder prediction 186 214 - -
Cco01g1492 1012 Pfam C2 domain 2 102 IPR000008 -
Cco01g1492 1012 Pfam C2 domain 526 627 IPR000008 -
Cco01g1492 1012 Gene3D C2 domain 1 126 IPR035892 -
Cco01g1492 1012 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 525 649 IPR035892 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1492 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1251 Cco-Chr1:19303679 Cco01g1492 Cco-Chr1:26691100 6.40E-256 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g818 . . . . . . . . . Cmo18g00151 . . . . . . . . . . . . . . . . . . . . . Cone2ag0931 . . . Lsi02g00412 Csa01g00881 Chy12g01241 Cme12g01664 . . . . . . . . . . . . Cma18g00190 . Car18g00182 Cpe09g01005 . Bhi08g01658 Tan05g1972 . . . . . Cla01g01329 Cam01g1399 Cec01g1431 Cco01g1492 Clacu01g1396 Cmu01g1304 Cre01g1237 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012076 0 3 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 4 1 30