Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1501 ATGGGGAAGAACGAATTTCTAACCCCTAAAGCGATCGCGAACAGAATCAAGGCAAAAGGGTTACAGAAGCTCCGATGGTATTGCCAGATGTGTCAAAAGCAGTGCCGGGATGAGAATGGCTTTAAATGTCACTGTATGAGTGAAAGCCATCAGCGCCAGATGCAGATCTTTGGCCAAAATCCTCATCGTATTGTTGAGGGCTACTCTGAAGAATTTGAGAGTTCTTTCATGGAGCATCTTAAGCGTAGCCATCGGTTCAGTCGCGTGGCAGCTACAGTTGTCTATAATGAATACATTAACGACAGACATCATATTCATATGAATTCAACGCAGTGGGCTACTCTTACTGAGTTTGTAAAGCACTTGGGTCGAACTGGGCAATGTAAGGTAGAGGAGACTCCCAAGGGTTGGTTCATTACTTACATAGATAGAGATTCGGAGACACTTTTTAAAGAGAGAATGAAAAATAAGAGGATGCGGGCAGATTTAGCTGAGGAAGAGAAGCAAGAGAGAGAGATAAAGAGGCAAATTGAGAGGGCTGAGCAATTAGCACCTTTGGCTTCTCTATCTGCTGAGCCTTTGGAGACTGAACAAACGAGAGAGTTGAAATTGGATACTGGGGTTAAGCTAGGATTTGCTTTGGGAACATCATCAAAATTGAAGGAGAAATGTGAGAGTTCCAGGGTGGTTTTTGATGAGGATGAGACACATGAGACTGCCAAGGGGAAACCTGTAGAGAATTCCAAAAACAAGATGGGTGGTGGTGGTCTGTCAGCTTTGGAGGCATTGATGAGAGAAGAAGAGATGAAGAAGGAGAAGCTTAATAGGAAGGATTACTGGCTTTGCGAGGGAATAATTGTAAAGATCATGAGCAAGGATTTGGCTGAGAAGGGATACTATAAACAGAAGGGAGTTGTGCGAAAAGTGATTGATAAATATGTTGGAGAGATCGAAATGCTCGATGGCAAGCATGTGTTGAGAGTTGATCAAGAAGAATTAGAAACAGTGATACCACAAATTGGTGGCTTAGTAAGGATTGTAAATGGGGCGTATTGTGGATCAAATGCTAGGTTGTTGGGCGTTGATACTGATAAGTTTTGTGCTAAAGTGCAAATAGAGAAGGGTGTGTATGATGGCAGGGTACTTAAGGCTGTTGAATATGAAGATATTTGTAAACTTGCATCATAA 1188 42.34 MGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMQIFGQNPHRIVEGYSEEFESSFMEHLKRSHRFSRVAATVVYNEYINDRHHIHMNSTQWATLTEFVKHLGRTGQCKVEETPKGWFITYIDRDSETLFKERMKNKRMRADLAEEEKQEREIKRQIERAEQLAPLASLSAEPLETEQTRELKLDTGVKLGFALGTSSKLKEKCESSRVVFDEDETHETAKGKPVENSKNKMGGGGLSALEALMREEEMKKEKLNRKDYWLCEGIIVKIMSKDLAEKGYYKQKGVVRKVIDKYVGEIEMLDGKHVLRVDQEELETVIPQIGGLVRIVNGAYCGSNARLLGVDTDKFCAKVQIEKGVYDGRVLKAVEYEDICKLAS 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26870265 26871452 - CcPI632755_01g015010.1 Cco01g1501 170363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1501 395 SUPERFAMILY beta-beta-alpha zinc fingers 26 66 IPR036236 -
Cco01g1501 395 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 1 394 IPR037321 GO:0003690(PANTHER)|GO:0005634(PANTHER)|GO:0006260(PANTHER)|GO:0006974(PANTHER)
Cco01g1501 395 FunFam DNA/RNA-binding protein kin17-like 284 337 - -
Cco01g1501 395 SMART Kin17_mid_2 52 178 IPR019447 -
Cco01g1501 395 Pfam KN17 SH3-like C-terminal domain 276 329 IPR041330 -
Cco01g1501 395 CDD KOW_KIN17 340 393 IPR041995 -
Cco01g1501 395 Coils Coil 257 277 - -
Cco01g1501 395 FunFam DNA/RNA-binding protein KIN17, putative 338 394 - -
Cco01g1501 395 Gene3D - 60 160 IPR038254 -
Cco01g1501 395 FunFam DNA/RNA-binding protein KIN17, putative 61 160 - -
Cco01g1501 395 MobiDBLite consensus disorder prediction 232 252 - -
Cco01g1501 395 Gene3D - 338 394 IPR014722 -
Cco01g1501 395 Coils Coil 154 183 - -
Cco01g1501 395 Gene3D - 284 337 - -
Cco01g1501 395 Pfam Domain of Kin17 curved DNA-binding protein 52 177 IPR019447 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1501 Cco-Chr1:26870265 Cco05g1538 Cco-Chr5:19397566 6.20E-159 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1501 K13102 - csv:101216499 716.072