Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1508 ATGGAATTTGTGCCTTCGAGAAAGCATGTATCTTCAACTTGTTCAGCATTCCAAAGTTCTTGGCCACATATATTTCAGTTGGCAGAAACTGCAGCTCCTTTTTCTAGCAGGGGCATTGCTACGACAAGCTCGATGGAATCAGCTCTACAAGGATCCCCTGCAGTTGATTCTGATATAACTCCTCGTATCAAATTTAAGAGGCTTGATAAAACCTCAAGACACATAATGCAGATTTTAGATAAGGAAGCTGTTGAGGAGGTAAAAGCACAGAGAGAAATTCCAGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGGAAGTACCTGAGAACAAGCGGCGTGTCTCAACATTAAAAGGTATTGTAATAGCCAGAAGAAATGCTGGTCTCAACACAACTTTTAGATTAAGGAGGGTAGTTGCTGGTGTTGGGATTGAGTCCCTCTTCCCTCTATACTCACCAAACATTAAAGAGATCAAGGTGTTGGACAAGAAGAAAGTGCGGAGGGCTAAGCTTTACTACCTTAGGGACAAAATGAACGCGCTTAAGAAGCACTAG 558 42.11 MEFVPSRKHVSSTCSAFQSSWPHIFQLAETAAPFSSRGIATTSSMESALQGSPAVDSDITPRIKFKRLDKTSRHIMQILDKEAVEEVKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRVVAGVGIESLFPLYSPNIKEIKVLDKKKVRRAKLYYLRDKMNALKKH 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27074273 27076280 + CcPI632755_01g015080.1 Cco01g1508 170370

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1508 185 PRINTS Ribosomal protein L19 signature 80 109 IPR001857 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cco01g1508 185 PRINTS Ribosomal protein L19 signature 139 162 IPR001857 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cco01g1508 185 NCBIfam 50S ribosomal protein L19 84 179 IPR001857 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cco01g1508 185 Gene3D - 65 185 IPR038657 -
Cco01g1508 185 Pfam Ribosomal protein L19 83 180 IPR001857 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cco01g1508 185 SUPERFAMILY Translation proteins SH3-like domain 82 180 IPR008991 -
Cco01g1508 185 PANTHER RIBOSOMAL PROTEIN L19 9 182 IPR001857 GO:0003735(PANTHER)|GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cco01g1508 185 FunFam 50S ribosomal protein L19, chloroplastic 66 184 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1508 K02884 - - csv:101216309 294.664
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1508 Cco-Chr1:27074273 Cco10g0237 Cco-Chr10:2507241 2.20E-29 dispersed
Cco01g1507 Cco-Chr1:27064135 Cco01g1508 Cco-Chr1:27074273 3.20E-98 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g836 . . . . Bpe12g00672 . . . . Cmo18g00157 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo13g00149 . . . . . . Bma08g00079 . . . . Cma18g00195 . Car18g00188 Cpe09g00999 . . . . . . . . Cla01g01348 Cam01g1383 Cec01g1411 Cco01g1508 Clacu01g1414 Cmu01g1317 Cre01g1225 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003020 1 1 2 2 2 2 2 2 2 1 2 2 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 8 3 1 51