Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1528 ATGTTTTCTCTTCCTTCACAAGATCCCTTGGTTTCATCTTCTAATGATCATCATGAAACCCTAGACAACCTTCTTTCTTCATATTCCCAATCAAGCAACTCTCTCCTTTATAACCTCTCAATTTTGAAGGAGAAACTCCACCAAATCCAATCTGTTGTCAACATAGCCATCTACAACCTTCAAAACTCAACTGAATCTCTGCCCCCGGCCTCGTCACCAGTGACTGCGGCCGTCAACTCTTTGATTCAAGAACTCATCATGGCTGCTTCCTCCATGTTGTTCACATGTCAACAGATGGATAACCTCGTCGTGAATGCCTCCTTACACAACAACAACGTCGATAACAACCTCCACGATCAGCACCACCACCGTCAAGGTCCCGTTGACGATGACAATCGACAATCCAGCACCCTTCTAGACATGGCCAACGACCATCATCACCAACATCAGGATTGGTACAACATGACGACATCTACTAATTATAACAACGACAACAACAGTAGAATAACGACAACAAAAACAACACAAGATCATCGAAATTCGATCAATATCGTAGAGCTAGACGCTTCGGATCTTCTAGCAAAATACACCCATTATTGTCAAATTTGTGGGAAAGGGTTCAAGCGGGATGCCAACTTGAGAATGCACATGCGAGCGCACGGGGACGAGTACAAAGCAAGCGGGGCGTTGAGCAACCCAGAGAAGAGCCATAGAAGGGACTTGAATAATATAAGCAAGATGGGGACCAAATATTCATGTCCACAAGAAGGCTGCAGATGGAACCAAAAACATGTCAAGTTTCAACCATTGAAATCACTGATTTGTGTGAAAAATCACTTCAAAAGAACTCATTGCCCCAAAATGTATGTTTGCAAATTGTGTAGTAGGAAGAAATTTTCAGTGCTATCTGATTTGAGAACTCATGAGAAGCACTGTGGAGATGTGAAATGGCTATGTTCTTGTGGAACAACATTTTCCAGAAAAGATAAGCTGATGGGACATGTTGCTTTGTTTGTTGGGCATGCTCCGGCAATCGGTTCGTCGACAAAATTTTCGGGAAAACAGGAAGAACATCAGTATGTTCATTCGTTCTAA 1095 42.74 MFSLPSQDPLVSSSNDHHETLDNLLSSYSQSSNSLLYNLSILKEKLHQIQSVVNIAIYNLQNSTESLPPASSPVTAAVNSLIQELIMAASSMLFTCQQMDNLVVNASLHNNNVDNNLHDQHHHRQGPVDDDNRQSSTLLDMANDHHHQHQDWYNMTTSTNYNNDNNSRITTTKTTQDHRNSINIVELDASDLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKASGALSNPEKSHRRDLNNISKMGTKYSCPQEGCRWNQKHVKFQPLKSLICVKNHFKRTHCPKMYVCKLCSRKKFSVLSDLRTHEKHCGDVKWLCSCGTTFSRKDKLMGHVALFVGHAPAIGSSTKFSGKQEEHQYVHSF 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27681642 27682736 + CcPI632755_01g015280.1 Cco01g1528 170390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1528 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 198 225 IPR013087 -
Cco01g1528 364 MobiDBLite consensus disorder prediction 113 135 - -
Cco01g1528 364 SUPERFAMILY beta-beta-alpha zinc fingers 196 223 IPR036236 -
Cco01g1528 364 FunFam Zinc finger protein 574 197 222 - -
Cco01g1528 364 ProSitePatterns Zinc finger C2H2 type domain signature. 200 220 IPR013087 -
Cco01g1528 364 Pfam Zinc finger, C2H2 type 198 220 IPR013087 -
Cco01g1528 364 Gene3D Classic Zinc Finger 172 256 - -
Cco01g1528 364 SMART c2h2final6 198 220 IPR013087 -
Cco01g1528 364 SMART c2h2final6 289 311 IPR013087 -
Cco01g1528 364 SMART c2h2final6 251 284 IPR013087 -
Cco01g1528 364 MobiDBLite consensus disorder prediction 115 130 - -
Cco01g1528 364 Gene3D Classic Zinc Finger 287 337 - -
Cco01g1528 364 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 26 352 IPR044300 GO:0010044(InterPro)|GO:0010447(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1528 Cco-Chr1:27681642 Cco09g1040 Cco-Chr9:9970606 1.20E-60 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58630 PF00096 zf-C2H2 9.30E-05 CL0361 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1528 - - - 0.0