Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1551 ATGGCGCTCTCTCTATCCCTACAACTCATCCGTTTCCCTCCTCAACCATTATCCTCATCCTCTCAACATCTTCTCATCTCTGACCTCGCCTCCGTCTCGCGCTTCTTCCGATCTCCATGTCTTTCCTCTTTGGCTCCGTCGCGGAGCTGCACGATGAAGTTATCTTCCAGAACCAAGTGTTTCTCCATGTCCACCGAGGAGGAGCAGTGGAGCGAATCGGAAGCGTTGGTGTCCGATGTGGACGGAGGGGGAGATCTTGAGGATGATATTGATATTGGTGTTCAGGAAGACAGCTCTGTGGCCACTGCTGCTTCTGCGCAGAAAAATTCTACCTCGTCGCCTAGTGATTATCTGTCGCTTGCGATCCGAGAGCAGGTTTATGAGGTGTTAGAGGTTAAAGATGATGGAACCGTATCTACCAGGAAGGTTAACAGACGGCAACTATTGAAGTCAAGTGGGCTTCGTCCACGTGATATCCGAAGTGTTGATCCATCTTTATTTTTGACAAACTCAATGCCTACATTACTGGTCCGTGAACATGCTATTTTGCTTAATCTGGGATCATTGCGAGCAATAGCTATGCAGGATTGTGTCCTCATATTTGATTATAACCGTCCAGGAGGACAAGCTTTTATTGAATCATTGTTGCCTCGATTGAACCCAAAAAACATGAATGGAGTGCCAGCAATGCCATTTGAACTTGAGGTTGTTGAAGCTGCATTGCTTTCACGAACTCAGCGTTTGGAGCAGCGACTAATGAAAGTAGAACCTCGTGTTCAAGCTCTGCTTGAGGTATTGCCCAACAAATTAACTGCAGATGTGTTGGAACAACTTCGTATTAGCAAGCAGACATTGGTTGAATTAGGGTCCAGGGCAGGGGCTCTTAGACAGATGCTTCTTGATCTTCTGGAGGATCCGCAAGAAATACGACGCATCTGTATTATGGGAAGAAATTGCACGCTTAATAAAAGAAATCATGATGTGGAGTGCTCTCTCCCTTTGGATAAGCAGATTGCGGATGAAGAGGAAGAAGAAATAGAAATGCTGTTGGAAAATTATCTCCAGAGATGCGAATCTTGTCATGGTCAGGCTGAAAGGCTTCTGGATTCAGCAAAAGAAATGGAAGATTCAATTGCCGTAAATTTGAGCTCGCGGCGACTAGAGGTTAGCAGAGTGGAGTTGCTTCTCCAAGTTGGGACATTTTGTGTGGCAGTTGGTGCTTTAGTTGCAGGAATATTCGGCATGAACTTACGATCATACCTTGAAGAACACGTGTTTGCCTTCTGGTTAACAACAGCTGGGATAATTGTTGGGGCTGTTGTGGCATTCTTTCTCATGTATTCATACCTCAGAGACAGGAGAATCCTCAAAAAGGATATTCGTCTAATCTCAGCAGATTTGGCAGCTATGGTGTCTGGTAAACAGCGGCAAAAAAGAGATCTCATGAGTGAGAGAGAAAATGAGAAGAAAGATCCATGGCACTTATTGACACTACTCTGCGATGACGACGGTCTCAGCACAGACGACAGTGTGAGACAGTCGATGGCGTATAGTGAATTACAATTGAGTAGATTAACATGA 1581 45.22 MALSLSLQLIRFPPQPLSSSSQHLLISDLASVSRFFRSPCLSSLAPSRSCTMKLSSRTKCFSMSTEEEQWSESEALVSDVDGGGDLEDDIDIGVQEDSSVATAASAQKNSTSSPSDYLSLAIREQVYEVLEVKDDGTVSTRKVNRRQLLKSSGLRPRDIRSVDPSLFLTNSMPTLLVREHAILLNLGSLRAIAMQDCVLIFDYNRPGGQAFIESLLPRLNPKNMNGVPAMPFELEVVEAALLSRTQRLEQRLMKVEPRVQALLEVLPNKLTADVLEQLRISKQTLVELGSRAGALRQMLLDLLEDPQEIRRICIMGRNCTLNKRNHDVECSLPLDKQIADEEEEEIEMLLENYLQRCESCHGQAERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGTFCVAVGALVAGIFGMNLRSYLEEHVFAFWLTTAGIIVGAVVAFFLMYSYLRDRRILKKDIRLISADLAAMVSGKQRQKRDLMSERENEKKDPWHLLTLLCDDDGLSTDDSVRQSMAYSELQLSRLT 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28169010 28179615 - CcPI632755_01g015510.1 Cco01g1551 170413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1551 526 Gene3D - 119 203 - -
Cco01g1551 526 Gene3D Magnesium transport protein CorA, transmembrane region 206 387 - -
Cco01g1551 526 FunFam Magnesium transporter MRS2-11, chloroplastic 205 387 - -
Cco01g1551 526 Coils Coil 336 356 - -
Cco01g1551 526 CDD Mrs2_Mfm1p-like 129 455 IPR039204 -
Cco01g1551 526 FunFam Magnesium transporter MRS2-11, chloroplastic 122 203 - -
Cco01g1551 526 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 104 455 IPR039204 GO:0009941(PANTHER)|GO:0015095(PANTHER)|GO:0015693(PANTHER)
Cco01g1551 526 Pfam Magnesium transporter MRS2-like 132 386 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1551 K16075 - - csv:101219314 754.207
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco10g1274 . 1 447 MRS2 Gene Family AT1G16010 85.0 1.2e-206 716.1
Cco08g1198 . 88 462 MRS2 Gene Family AT1G16010 52.4 2.8e-107 386.0
Cco06g0676 . 1 365 MRS2 Gene Family AT5G64560 81.0 1.3e-158 556.2
Cco07g0064 . 796 1167 MRS2 Gene Family AT5G64560 68.4 9.0e-131 463.8
Cco02g0767 . 14 495 MRS2 Gene Family AT3G19640 64.4 3.0e-155 545.4
Cco05g1114 . 59 442 MRS2 Gene Family AT3G58970 70.3 1.0e-141 500.4
Cco02g0023 . 59 442 MRS2 Gene Family AT3G58970 70.1 4.9e-141 498.0
Cco08g1198 . 88 462 MRS2 Gene Family AT2G03620 68.4 4.2e-137 485.0
Cco10g1274 . 13 447 MRS2 Gene Family AT2G03620 53.0 3.6e-112 402.1
Cco05g1114 . 59 441 MRS2 Gene Family AT4G28580 50.7 8.0e-93 337.8
Cco06g0676 . 1 327 MRS2 Gene Family AT5G09690 76.1 3.9e-127 451.4
Cco07g0064 . 796 1129 MRS2 Gene Family AT5G09690 63.0 1.0e-106 383.6
Cco10g1274 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.7e-78 288.1
Cco06g0676 . 23 287 MRS2 Gene Family AT5G09720 68.3 1.7e-89 326.2
Cco07g0064 . 831 1089 MRS2 Gene Family AT5G09720 60.5 2.7e-74 275.8
Cco10g1274 . 1 447 MRS2 Gene Family AT1G80900 83.0 2.1e-200 695.3
Cco08g1198 . 80 462 MRS2 Gene Family AT1G80900 53.9 4.0e-106 382.1
Cco01g1551 . 16 455 MRS2 Gene Family AT5G22830 68.6 1.5e-156 549.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004489 1 3 0 1 1 1 3 1 1 1 1 1 2 1 2 3 1 2 2 1 2 1 1 1 1 2 1 1 1 1 41