Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco01g1552 | ATGTCTCGCCGAGGCAGTGGTGGGGGCGGGGGCGGCGGCGGCGGTCGTGGTTCAGGTGGTCGTGGGGGACAACCGTCTCCGGCTATATCTCGCGGCGGCGGTGGCAGAGGCGGCGGTGGAAGAGGTGGACGAGGCGGTGGAGGGAGAGATGGAGGTAGAGTAGGTCATCCAGCTTCTCAGCAGTTTCCTTCTTCGACTCCTCAGCCTACTCCGGTTGCTTCCCCTCCTCCTCCCCAGACTTCTAAGGGAGCATCTTCTTCATCCTCGTCAGGTACTGCTACTCACTCACAGCCCGAGGTTTCGAGGATCGAGGCACAAGTGGAGAAGATGACATTGACGCCGCAGAAAGTTCCGCCGTCTTCATCTAAAGATTTGGCTGTGGCGAAAAGGCCGGGATATGGAACCATTGGGCAGGAAGTTGTTGTTCGAGCTAATCATTTTCTGGTTCATGTTGCAGACAAAGATCTCTACCATTACGATGTTTCCATTACACCTGAGGTTACATCCAAAAAGGTCTGCCGAGAAATTATAGACCAGCTTGCAAAAATGTATAGAGAATCTCATTTGGGTGGAAGATATATAGCATATGATGGTGGGAAAAGTGTTTATGTTGCTGGTCAACTTCCATTTTCGTCCAAAGAGTTCATGATAAAATTAGTCCGTAAAGATGATGCTGGGTCTTCCCAACCACCAAGGAAAGAACGCGAGTTCAAAGTGTCTATCAAATTTGCTTCCAAGCCAGACCTCCATCATCTACAACAGTTTTTACATGGATGGCAGCGAGATGCTCCTCAGGAGACTATACAAGTTCTTGATGTTGTTTTAAGAACAAAACCATCTTTCAAATACACAGTTGTTGGAAGGTCTTTTTTCTCGCTTACTTTGGGGGAACCAGGTGAACTGGGTAATGGCGTTGAGTACTGGAGGGGATATTACCAAAGTCTACGACCTGTACAAATGGGTCTCTCTTTGAATATAGATGTGTCAGCTAGGTCATTTTATGAACCAATATGTGTGACAGACTATGTTGCCAAACACTTCAACCTAAGAAATTTCTCGAAGCCAATATCTGATCAGGATTGTCGCAAGATCCGAAGGGTACTTAAAGGTGTAAAGGTGGCATTAACGTGTAGGGAGCATGCCAGGACCTACAAAATTACTGGGATATCATCAGAGCCTGTAAACAGATTAATGTTCACTCTTGATGATCAGAGAACCCGAATCTCTGTTGCACAATACTTTCGTGAAAAATATGGTGTTGTGCTCAAATTTCCATCTCTACCGGCTATACAAGCTGGTAATGATGCGAAGCCCATCTATTTGCCTATGGAGGTTTGTAGGATTGTTGGTGGGCAAAGATATACCAAAAAATTGAATGAACGCCAAGTAACTGAGATGTTAAGAGCGACTTGTCAGAGGCCTTTAGACAGGGCAAACAGTATAAAGAAGATGGTTGAAAAGAACGATTATTCTAAAGATGAAACTGTTACGGATTTTGGCATTAATGTTGTACAACAGTTATGTGATGTTGATGCTCGTGTTTTGCCGTCCCCAATGCTCAAATATCATGAAACTGGCAAAGAATCGAGAGTTGATCCAAGGATGGGTCAATGGAATATGATCAATAAGAAAATGATCAATGGTGGTAGAGTTGATTATTGGGGCTGCGTGAACTTCTCTTCACGGTTGGATCCAGGCCTGCCATCCGACTTTTGCCACCAGTTGGTTAGCATGTGCAATAGCAAAGGAATGGTTTTCAACCCTACTCCGCTGTTTCCTGTACGCACTGCACATGCAAATCAAATTGATGGTGTCCTTAGAGACATTCATAGTCAGTCTGTAAAAAGTCTGGGAGGCCAGGGCAAGTCTCTTCAGTTGCTCATAATCATTTTACCTGATGTTTCTGGCTCCTATGGGAAGATCAAAAGGATATGTGAGACTGAGCTTGGAATTGTTTCACAATGTTGCCAGCCTAGGCAGGCGCAAAAGCTAAACAAGCAGTACTTTGAAAATGTGGCCCTTAAAATTAATGTTAAGGTTGGGGGAAGAAACAATGTCCTTAATGATGCTATTCAGCGAAGAATTCCTCTTGTTACGGATCGGCCTACAATAATCATTGGAGCAGATGTAACACATCCACAACCAGGAGAGGACTCCAGTGCTTCAATAGCAGCTGTTGTTGCCTCTATGGACTGGCCTGAGGTAACGAAGTATAGAGGAATTGTTTCAGCTCAGGCTCACCGTGAAGAAATTATACAAGATTTGTACAAAGAGAGTCAAGATCCTCAGAAAGGATTGGTGCGTGCGGGAATGATTAAGGAGCTGTTCATTGCTTTTAGAAGGTCAACGAATATGAAACCGCACAGAATAATATTCTACAGGGATGGTGTAAGTGAAGGACAGTTCTCTCAAGTTCTATTTTATGAGGTGGATGCAATCAGGAAGGCATGTGCCTCGCTTGAAGATGGTTACCAGCCTCCAATAACCTTTGTAGTGGTGCAAAAGAGACATCATACCCGTCTTTTCCCCACTGGTCGGGAAACTGATCGAAGTGGAAACATCCTTCCAGGTACCGTTGTCGATACGAAAATTTGCCATCCAACTGAATTTGATTTCTACTTAAACAGCCATGCTGGCATTCAGGGGACAAGTAGACCAACACATTATCATGTTTTATATGATGAAAACAAATTCACTGCTGATGCAATGCAAATGCTTACGAATAATCTATGCTACACGTATGCAAGGTGCACACGGTCTGTTTCCATTGTTCCACCAGCATACTATGCCCATCTTGCAGCCTTTCGTGCTCGTTATTACATGGAGGGTGATTCATCTGACAGCGGTTCGACGAGTTCAGGTGGTGGGAATGTAGAGATTCAACGGCTGCCAAGCATAAAAGAAAATGTGAAGGATGTCATGTTTTACTGTTGA | 2934 | 44.55 | MSRRGSGGGGGGGGGRGSGGRGGQPSPAISRGGGGRGGGGRGGRGGGGRDGGRVGHPASQQFPSSTPQPTPVASPPPPQTSKGASSSSSSGTATHSQPEVSRIEAQVEKMTLTPQKVPPSSSKDLAVAKRPGYGTIGQEVVVRANHFLVHVADKDLYHYDVSITPEVTSKKVCREIIDQLAKMYRESHLGGRYIAYDGGKSVYVAGQLPFSSKEFMIKLVRKDDAGSSQPPRKEREFKVSIKFASKPDLHHLQQFLHGWQRDAPQETIQVLDVVLRTKPSFKYTVVGRSFFSLTLGEPGELGNGVEYWRGYYQSLRPVQMGLSLNIDVSARSFYEPICVTDYVAKHFNLRNFSKPISDQDCRKIRRVLKGVKVALTCREHARTYKITGISSEPVNRLMFTLDDQRTRISVAQYFREKYGVVLKFPSLPAIQAGNDAKPIYLPMEVCRIVGGQRYTKKLNERQVTEMLRATCQRPLDRANSIKKMVEKNDYSKDETVTDFGINVVQQLCDVDARVLPSPMLKYHETGKESRVDPRMGQWNMINKKMINGGRVDYWGCVNFSSRLDPGLPSDFCHQLVSMCNSKGMVFNPTPLFPVRTAHANQIDGVLRDIHSQSVKSLGGQGKSLQLLIIILPDVSGSYGKIKRICETELGIVSQCCQPRQAQKLNKQYFENVALKINVKVGGRNNVLNDAIQRRIPLVTDRPTIIIGADVTHPQPGEDSSASIAAVVASMDWPEVTKYRGIVSAQAHREEIIQDLYKESQDPQKGLVRAGMIKELFIAFRRSTNMKPHRIIFYRDGVSEGQFSQVLFYEVDAIRKACASLEDGYQPPITFVVVQKRHHTRLFPTGRETDRSGNILPGTVVDTKICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENKFTADAMQMLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYMEGDSSDSGSTSSGGGNVEIQRLPSIKENVKDVMFYC | 977 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 28226936 | 28233866 | - | CcPI632755_01g015520.1 | Cco01g1552 | 170414 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco01g1552 | 977 | MobiDBLite | consensus disorder prediction | 79 | 100 | - | - | |
Cco01g1552 | 977 | Pfam | PAZ domain | 360 | 467 | IPR003100 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Cco01g1552 | 977 | Pfam | Argonaute linker 2 domain | 476 | 522 | IPR032472 | - | |
Cco01g1552 | 977 | SUPERFAMILY | PAZ domain | 333 | 490 | IPR036085 | GO:0005515(InterPro) | |
Cco01g1552 | 977 | SMART | DUF1785_2 | 284 | 336 | IPR014811 | - | |
Cco01g1552 | 977 | MobiDBLite | consensus disorder prediction | 1 | 100 | - | - | |
Cco01g1552 | 977 | FunFam | protein argonaute 10-like | 694 | 977 | - | - | |
Cco01g1552 | 977 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C | 130 | 963 | - | GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER) | |
Cco01g1552 | 977 | SMART | Piwi_a_2 | 626 | 942 | IPR003165 | GO:0003676(InterPro) | |
Cco01g1552 | 977 | ProSiteProfiles | Piwi domain profile. | 626 | 942 | IPR003165 | GO:0003676(InterPro) | |
Cco01g1552 | 977 | Gene3D | - | 694 | 977 | IPR036397 | GO:0003676(InterPro) | |
Cco01g1552 | 977 | Pfam | Mid domain of argonaute | 533 | 611 | IPR032473 | - | |
Cco01g1552 | 977 | SUPERFAMILY | Ribonuclease H-like | 622 | 943 | IPR012337 | - | |
Cco01g1552 | 977 | ProSiteProfiles | PAZ domain profile. | 338 | 450 | IPR003100 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Cco01g1552 | 977 | Pfam | Piwi domain | 627 | 941 | IPR003165 | GO:0003676(InterPro) | |
Cco01g1552 | 977 | CDD | Piwi_ago-like | 494 | 941 | IPR045246 | - | |
Cco01g1552 | 977 | SMART | PAZ_2_a_3 | 339 | 472 | IPR003100 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Cco01g1552 | 977 | FunFam | Argonaute 10 | 514 | 688 | - | - | |
Cco01g1552 | 977 | Pfam | N-terminal domain of argonaute | 138 | 275 | IPR032474 | - | |
Cco01g1552 | 977 | CDD | PAZ_argonaute_like | 336 | 449 | - | - | |
Cco01g1552 | 977 | Gene3D | paz domain | 331 | 454 | - | - | |
Cco01g1552 | 977 | Gene3D | - | 514 | 689 | - | - | |
Cco01g1552 | 977 | Pfam | Argonaute linker 1 domain | 286 | 335 | IPR014811 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g1552 | Cco-Chr1:28226936 | Cco01g1846 | Cco-Chr1:31015132 | 7.30E-302 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco01g1552 | K11593 | - | csv:116403995 | 1667.13 |