Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1552 ATGTCTCGCCGAGGCAGTGGTGGGGGCGGGGGCGGCGGCGGCGGTCGTGGTTCAGGTGGTCGTGGGGGACAACCGTCTCCGGCTATATCTCGCGGCGGCGGTGGCAGAGGCGGCGGTGGAAGAGGTGGACGAGGCGGTGGAGGGAGAGATGGAGGTAGAGTAGGTCATCCAGCTTCTCAGCAGTTTCCTTCTTCGACTCCTCAGCCTACTCCGGTTGCTTCCCCTCCTCCTCCCCAGACTTCTAAGGGAGCATCTTCTTCATCCTCGTCAGGTACTGCTACTCACTCACAGCCCGAGGTTTCGAGGATCGAGGCACAAGTGGAGAAGATGACATTGACGCCGCAGAAAGTTCCGCCGTCTTCATCTAAAGATTTGGCTGTGGCGAAAAGGCCGGGATATGGAACCATTGGGCAGGAAGTTGTTGTTCGAGCTAATCATTTTCTGGTTCATGTTGCAGACAAAGATCTCTACCATTACGATGTTTCCATTACACCTGAGGTTACATCCAAAAAGGTCTGCCGAGAAATTATAGACCAGCTTGCAAAAATGTATAGAGAATCTCATTTGGGTGGAAGATATATAGCATATGATGGTGGGAAAAGTGTTTATGTTGCTGGTCAACTTCCATTTTCGTCCAAAGAGTTCATGATAAAATTAGTCCGTAAAGATGATGCTGGGTCTTCCCAACCACCAAGGAAAGAACGCGAGTTCAAAGTGTCTATCAAATTTGCTTCCAAGCCAGACCTCCATCATCTACAACAGTTTTTACATGGATGGCAGCGAGATGCTCCTCAGGAGACTATACAAGTTCTTGATGTTGTTTTAAGAACAAAACCATCTTTCAAATACACAGTTGTTGGAAGGTCTTTTTTCTCGCTTACTTTGGGGGAACCAGGTGAACTGGGTAATGGCGTTGAGTACTGGAGGGGATATTACCAAAGTCTACGACCTGTACAAATGGGTCTCTCTTTGAATATAGATGTGTCAGCTAGGTCATTTTATGAACCAATATGTGTGACAGACTATGTTGCCAAACACTTCAACCTAAGAAATTTCTCGAAGCCAATATCTGATCAGGATTGTCGCAAGATCCGAAGGGTACTTAAAGGTGTAAAGGTGGCATTAACGTGTAGGGAGCATGCCAGGACCTACAAAATTACTGGGATATCATCAGAGCCTGTAAACAGATTAATGTTCACTCTTGATGATCAGAGAACCCGAATCTCTGTTGCACAATACTTTCGTGAAAAATATGGTGTTGTGCTCAAATTTCCATCTCTACCGGCTATACAAGCTGGTAATGATGCGAAGCCCATCTATTTGCCTATGGAGGTTTGTAGGATTGTTGGTGGGCAAAGATATACCAAAAAATTGAATGAACGCCAAGTAACTGAGATGTTAAGAGCGACTTGTCAGAGGCCTTTAGACAGGGCAAACAGTATAAAGAAGATGGTTGAAAAGAACGATTATTCTAAAGATGAAACTGTTACGGATTTTGGCATTAATGTTGTACAACAGTTATGTGATGTTGATGCTCGTGTTTTGCCGTCCCCAATGCTCAAATATCATGAAACTGGCAAAGAATCGAGAGTTGATCCAAGGATGGGTCAATGGAATATGATCAATAAGAAAATGATCAATGGTGGTAGAGTTGATTATTGGGGCTGCGTGAACTTCTCTTCACGGTTGGATCCAGGCCTGCCATCCGACTTTTGCCACCAGTTGGTTAGCATGTGCAATAGCAAAGGAATGGTTTTCAACCCTACTCCGCTGTTTCCTGTACGCACTGCACATGCAAATCAAATTGATGGTGTCCTTAGAGACATTCATAGTCAGTCTGTAAAAAGTCTGGGAGGCCAGGGCAAGTCTCTTCAGTTGCTCATAATCATTTTACCTGATGTTTCTGGCTCCTATGGGAAGATCAAAAGGATATGTGAGACTGAGCTTGGAATTGTTTCACAATGTTGCCAGCCTAGGCAGGCGCAAAAGCTAAACAAGCAGTACTTTGAAAATGTGGCCCTTAAAATTAATGTTAAGGTTGGGGGAAGAAACAATGTCCTTAATGATGCTATTCAGCGAAGAATTCCTCTTGTTACGGATCGGCCTACAATAATCATTGGAGCAGATGTAACACATCCACAACCAGGAGAGGACTCCAGTGCTTCAATAGCAGCTGTTGTTGCCTCTATGGACTGGCCTGAGGTAACGAAGTATAGAGGAATTGTTTCAGCTCAGGCTCACCGTGAAGAAATTATACAAGATTTGTACAAAGAGAGTCAAGATCCTCAGAAAGGATTGGTGCGTGCGGGAATGATTAAGGAGCTGTTCATTGCTTTTAGAAGGTCAACGAATATGAAACCGCACAGAATAATATTCTACAGGGATGGTGTAAGTGAAGGACAGTTCTCTCAAGTTCTATTTTATGAGGTGGATGCAATCAGGAAGGCATGTGCCTCGCTTGAAGATGGTTACCAGCCTCCAATAACCTTTGTAGTGGTGCAAAAGAGACATCATACCCGTCTTTTCCCCACTGGTCGGGAAACTGATCGAAGTGGAAACATCCTTCCAGGTACCGTTGTCGATACGAAAATTTGCCATCCAACTGAATTTGATTTCTACTTAAACAGCCATGCTGGCATTCAGGGGACAAGTAGACCAACACATTATCATGTTTTATATGATGAAAACAAATTCACTGCTGATGCAATGCAAATGCTTACGAATAATCTATGCTACACGTATGCAAGGTGCACACGGTCTGTTTCCATTGTTCCACCAGCATACTATGCCCATCTTGCAGCCTTTCGTGCTCGTTATTACATGGAGGGTGATTCATCTGACAGCGGTTCGACGAGTTCAGGTGGTGGGAATGTAGAGATTCAACGGCTGCCAAGCATAAAAGAAAATGTGAAGGATGTCATGTTTTACTGTTGA 2934 44.55 MSRRGSGGGGGGGGGRGSGGRGGQPSPAISRGGGGRGGGGRGGRGGGGRDGGRVGHPASQQFPSSTPQPTPVASPPPPQTSKGASSSSSSGTATHSQPEVSRIEAQVEKMTLTPQKVPPSSSKDLAVAKRPGYGTIGQEVVVRANHFLVHVADKDLYHYDVSITPEVTSKKVCREIIDQLAKMYRESHLGGRYIAYDGGKSVYVAGQLPFSSKEFMIKLVRKDDAGSSQPPRKEREFKVSIKFASKPDLHHLQQFLHGWQRDAPQETIQVLDVVLRTKPSFKYTVVGRSFFSLTLGEPGELGNGVEYWRGYYQSLRPVQMGLSLNIDVSARSFYEPICVTDYVAKHFNLRNFSKPISDQDCRKIRRVLKGVKVALTCREHARTYKITGISSEPVNRLMFTLDDQRTRISVAQYFREKYGVVLKFPSLPAIQAGNDAKPIYLPMEVCRIVGGQRYTKKLNERQVTEMLRATCQRPLDRANSIKKMVEKNDYSKDETVTDFGINVVQQLCDVDARVLPSPMLKYHETGKESRVDPRMGQWNMINKKMINGGRVDYWGCVNFSSRLDPGLPSDFCHQLVSMCNSKGMVFNPTPLFPVRTAHANQIDGVLRDIHSQSVKSLGGQGKSLQLLIIILPDVSGSYGKIKRICETELGIVSQCCQPRQAQKLNKQYFENVALKINVKVGGRNNVLNDAIQRRIPLVTDRPTIIIGADVTHPQPGEDSSASIAAVVASMDWPEVTKYRGIVSAQAHREEIIQDLYKESQDPQKGLVRAGMIKELFIAFRRSTNMKPHRIIFYRDGVSEGQFSQVLFYEVDAIRKACASLEDGYQPPITFVVVQKRHHTRLFPTGRETDRSGNILPGTVVDTKICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENKFTADAMQMLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYMEGDSSDSGSTSSGGGNVEIQRLPSIKENVKDVMFYC 977
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28226936 28233866 - CcPI632755_01g015520.1 Cco01g1552 170414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1552 977 MobiDBLite consensus disorder prediction 79 100 - -
Cco01g1552 977 Pfam PAZ domain 360 467 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cco01g1552 977 Pfam Argonaute linker 2 domain 476 522 IPR032472 -
Cco01g1552 977 SUPERFAMILY PAZ domain 333 490 IPR036085 GO:0005515(InterPro)
Cco01g1552 977 SMART DUF1785_2 284 336 IPR014811 -
Cco01g1552 977 MobiDBLite consensus disorder prediction 1 100 - -
Cco01g1552 977 FunFam protein argonaute 10-like 694 977 - -
Cco01g1552 977 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 130 963 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Cco01g1552 977 SMART Piwi_a_2 626 942 IPR003165 GO:0003676(InterPro)
Cco01g1552 977 ProSiteProfiles Piwi domain profile. 626 942 IPR003165 GO:0003676(InterPro)
Cco01g1552 977 Gene3D - 694 977 IPR036397 GO:0003676(InterPro)
Cco01g1552 977 Pfam Mid domain of argonaute 533 611 IPR032473 -
Cco01g1552 977 SUPERFAMILY Ribonuclease H-like 622 943 IPR012337 -
Cco01g1552 977 ProSiteProfiles PAZ domain profile. 338 450 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cco01g1552 977 Pfam Piwi domain 627 941 IPR003165 GO:0003676(InterPro)
Cco01g1552 977 CDD Piwi_ago-like 494 941 IPR045246 -
Cco01g1552 977 SMART PAZ_2_a_3 339 472 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cco01g1552 977 FunFam Argonaute 10 514 688 - -
Cco01g1552 977 Pfam N-terminal domain of argonaute 138 275 IPR032474 -
Cco01g1552 977 CDD PAZ_argonaute_like 336 449 - -
Cco01g1552 977 Gene3D paz domain 331 454 - -
Cco01g1552 977 Gene3D - 514 689 - -
Cco01g1552 977 Pfam Argonaute linker 1 domain 286 335 IPR014811 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1552 Cco-Chr1:28226936 Cco01g1846 Cco-Chr1:31015132 7.30E-302 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1552 K11593 - csv:116403995 1667.13