Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1556 ATGGCGACGAAACGTTCTTTCACCCGTTTTGTAGAACAAGAGCTGGGAAAGTTTCCACATTTTGTAATTTGTGCAGTCCTTGAATGGGTTCTCATAATTTTGCTTTTCATTGATGGGTTTGTTGCATTTTTGGCCAACGAATTCGCCAAGTTCTTCGAATTGCGAGTTCCTTGTTTGTTCTGCACAAGAATCGACCATGTTTTAGTTAACAAAAATTCAGATTTTTATTACAACAATTCCATTTGTGAAGGACACAAGAAGGATATTTCATCTCTTGCATATTGTCACAACCACAAGAAACTCTCCGACATTCGGAAGATGTGTGAGGTTTGTCTTCTCTCTTTCGCGACTGAAAAGGAATCCGATTGCAATACCTACAAATCGCTCGTCGGAATTTTGCACAAGGATCTTGAATGTTTCGTTGAGGATGATAATCGTCAAGTTGTGAGCTTGCCGCCTGTGGGGAAGAAAGACGAAGGCCTGCAAATGGAGAAAGGGGTTGGTGGTAATTATTGTTGTTGTTCTTGTTGTGGGGAGCCATTGAAAGTTAAATCCTCCAATTCAAAAGGGAAGAATGGGAGTTCCTTTTCACAAGCTCCTGCTCCTTCACCACGAGCTTCGTTTACGCCCGCTTTCAGACACGACGACAAAACTGGCTTGGAATTGCCGCACATTCGTTATACCGAACTCAAGTTGTTGTCAGATAGTGAATCGGAGTTCGTCGAAGATGACGAAGGTTTACATGGAAGAAATCTTGATGCTCATCAATTTAAGGAAGATGTGAAAGCTGTTAAAGTGCCATTGTTACCTGAGCCTGAGGATGTGCATGAAAGTTCAAGGACCCCTGTCTTTGGTAAAGGAAACAAATTTTTTGGTATTCCACTAACAGATTCTGCTAATAACAGTCCTAGGTGGGCTATAAGGATCTCTAGAAAATCACCACTTGAAAGATCAGAGCTTTCAGCAGAGACTTATGAAGCAGATATGATGGGGCCAGGAGAAAATGATTCCATTTTGAATTGCTTGAAAAGACAAGTTCGGATAGATCGAAAATCGCTCATGGAGTTATACATGGAACTGGACGAAGAAAGAAGTGCTTCGGCAGTGGCAGCAAACAATGCAATGGCCATGATTACTCGTTTACAAGCCGAAAAGGCGGCCGTTCAGATGGAAGCTTTACAGTACCAAAGAATGATGGAAGAACAGGCAGAGTATGATCAGGAAGCCTTACAAGCTACAAATGATTTGCTTGCTAAGAGAGAGGAAGACATTAAGGTCTTGGAGGCTGAACTTGACGCTTACAGAGAAAAATATGGGTATCTTGGGGAAGGTTGTCTTAAGATGTCTGAAGATGAGATATCTGATGAAGATTACCAAGAAATCAAGTCACAAACCTGTTTGTCTTCTGATGAGAAATCTGAATGTAGTACACCTTTTAGTTTCAGCGGGAGAGAGAACAACAGGGAAAATTTTAACAATTTTGACATGACGAGTATACCGTCAGCGTTGAAGATTGCAGGAGAAAATAGCGAAGAAGAAAGCACAAACAATCATGAGGTAGCTTTGCCATTCTCCCTAGGGAAGGCTGAAGGAGAACACCAAACTGAACCACTGACAAACTTTAAAGGAGAAAAAACATATCTTTTAGGCCGCTTGAAAAAGGCAAAGAAGAACAACTTATCCTCAGATGGTGCAGTTTCTTCCATGCAATCAAGCTCTGGCAGTGTCAATCAACTAGATGAAGATACAGGAACGGGAAGAACTTCTGCACTGACCCGACAGCTCTCTCATCTTAACGAGATCGTGAGAGCACTTGAAGCAGATGATGGATCCTCCAAGGATGAAGGAAAAGTAATTTTAGCTGATATTTCTCACAAATTAGGGAAACTTCAAAACCTTGTCGACGAGAACAGTGATTCTTAA 1923 41.5 MATKRSFTRFVEQELGKFPHFVICAVLEWVLIILLFIDGFVAFLANEFAKFFELRVPCLFCTRIDHVLVNKNSDFYYNNSICEGHKKDISSLAYCHNHKKLSDIRKMCEVCLLSFATEKESDCNTYKSLVGILHKDLECFVEDDNRQVVSLPPVGKKDEGLQMEKGVGGNYCCCSCCGEPLKVKSSNSKGKNGSSFSQAPAPSPRASFTPAFRHDDKTGLELPHIRYTELKLLSDSESEFVEDDEGLHGRNLDAHQFKEDVKAVKVPLLPEPEDVHESSRTPVFGKGNKFFGIPLTDSANNSPRWAIRISRKSPLERSELSAETYEADMMGPGENDSILNCLKRQVRIDRKSLMELYMELDEERSASAVAANNAMAMITRLQAEKAAVQMEALQYQRMMEEQAEYDQEALQATNDLLAKREEDIKVLEAELDAYREKYGYLGEGCLKMSEDEISDEDYQEIKSQTCLSSDEKSECSTPFSFSGRENNRENFNNFDMTSIPSALKIAGENSEEESTNNHEVALPFSLGKAEGEHQTEPLTNFKGEKTYLLGRLKKAKKNNLSSDGAVSSMQSSSGSVNQLDEDTGTGRTSALTRQLSHLNEIVRALEADDGSSKDEGKVILADISHKLGKLQNLVDENSDS 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28295301 28297384 + CcPI632755_01g015560.1 Cco01g1556 170418

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1556 640 PANTHER MYOSIN-BINDING PROTEIN 2 296 633 IPR039306 GO:0017022(InterPro)
Cco01g1556 640 MobiDBLite consensus disorder prediction 188 204 - -
Cco01g1556 640 ProSiteProfiles GTD-binding domain profile. 337 435 IPR007656 -
Cco01g1556 640 MobiDBLite consensus disorder prediction 559 589 - -
Cco01g1556 640 MobiDBLite consensus disorder prediction 560 589 - -
Cco01g1556 640 Coils Coil 371 437 - -
Cco01g1556 640 MobiDBLite consensus disorder prediction 188 215 - -
Cco01g1556 640 Pfam Zein-binding 342 431 IPR007656 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1556 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1556 Cco-Chr1:28295301 Cco07g0072 Cco-Chr7:721506 1.80E-14 dispersed
Cco01g1556 Cco-Chr1:28295301 Cco02g1810 Cco-Chr2:30931723 7.30E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g468 Blo04g00753 . . . . Bpe13g00268 Bma06g00191 . Cmo13g00941 Cmo18g00108 . . . . . Cpe20g00213 . . . . . . . . . . . . . . . Cone2ag0876 Cone16ag0134 . . Lsi02g00337 Csa01g00808 Chy12g01308 Cme12g01733 . . Bda11g01681 . . Bpe15g00619 Bma03g00805 . Sed08g2554 . . Cma13g00915 Cma18g00138 Car13g00756 Car18g00130 Cpe09g01054 . Bhi08g01436 Tan05g2058 Cmetu12g1044 Lac10g0398 Hepe07g2265 . . Cla01g01407 Cam01g1469 Cec01g1512 Cco01g1556 Clacu01g1495 Cmu01g1389 Cre01g1306 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006343 1 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38