Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1564 ATGGATTCCATTTCCAGAAGGTTGAAGAAGAACGGAACCTCAAATTCCGAAAACTCTGACGGCCGCGACGGCAAGGCGGTCGTCAGAAGAAGGCCGCTGACGATGACGGAGCTTTTAACATCAACAAGCTCGACACTCGCGACGATCATGTTCGCCTGGTCAATCATCCGTCAATACTGCCCTCACGGCCTCCGCCAATATCTCCATATGTATTTGGGCAAGTTCATCGATTACATCTATCCTAATCCGTACATTCGAATCGCAATCTATGAATTCGTCGGCGACCGTCTCAGTCGGAACAAAGCCTTCGCGGCGGTTGAAGCTTATCTGAGCAATAAACTTTCAGACGACGCCAAAAGACTCAAAGCCGAGGTCGGGGAAAGCAAGAACAACTTCTCATTGAGTATGGATGAGTACGAAAGAGTCACCGATGGGTATGAAAATGCCGAATTCTGGTGGACTTTGAGCAAAATCTCCGGATCGGCAAAGAAATCCACCTCTCTGTATCCAGAACCCGATCGGAGATACTACCAGCTTAAATTTCACAAGAAGCATCGAGAACTTGTAATCCAATCGTATTTGAAGCATGTATTGAAGGAAGGGAAAGAAATCAAGGTGAATCAGAGGCGGAGGAAGCTTTACACTAATGGAACAGGAAATCGATGGCTAATTCACCGGCAATCGACGATGTGGAGCGAAGTTTACTTCGAACATCCTGCAACTTTTGACACAATCGGCATGGATCCAGAGAAAAAGCAAGAGATTATAGAAGATTTACTTACATTTAGCCAAAGTAAGGAGTATTATGCTCGAATCGGCAAGGCGTGGAAACGAGGTTACCTTCTGTACGGCCCGCCAGGGACGGGGAAATCGACGATGATCGCCGCCATGGCGAATTTGCTGAACTATGACGTTTACGATTTGGAATTAACAGCAGTGAAGGACAATACAGAACTTCGAAAGCTTCTAATTGAGACGACGAGTAAATCGATAATCGTGATTGAAGATATAGATTGTTCATTGGAACTCACAGGGCAAAGGAAAGTCAAGAAAGAAGAAAGCTCGAAGGAGGAGGAGAAAATAAAGGAGAAAATAATAAAGGAACCGAAGAAAGAAGAAGAAGATATGAGAAGCAGAGTAACTCTATCTGGATTGTTGAATTTCATCGACGGAATTTGGTCGGCGTGCGGCGGAGAGAGGCTGATTGTTTTCACAACAAATCACGTGGAGAAGCTTGATCCGGCATTGATTCGAAGAGGTAGAATGGATAAACACATAGAGCTTTCTTATTGTAACTATGAAGCTTTCAAAGTTTTGGCTAAGAACTACTTGAATGTTGAAACGCATGAGCTTTTCGAGGAGATCAAAGAGGTAATTAAAGATGCAAAAATGACGCCGGCGGATGTTGCAGAGAATCTCATGCCGAAATCACGGCAAGAAGAGGCGGAGACTTCGCTTCGTAGGTTAATTGGGAGCTTGGAAGAGATGAAGAGAGCGGCGGAGGAGAAGAAGAAAAGAAAGGAAGAAAAGTCAAAGGAGTCGTCGTCTTCACAGATAGTCAACGACAAAGAGTCTGATGATTAA 1584 44.57 MDSISRRLKKNGTSNSENSDGRDGKAVVRRRPLTMTELLTSTSSTLATIMFAWSIIRQYCPHGLRQYLHMYLGKFIDYIYPNPYIRIAIYEFVGDRLSRNKAFAAVEAYLSNKLSDDAKRLKAEVGESKNNFSLSMDEYERVTDGYENAEFWWTLSKISGSAKKSTSLYPEPDRRYYQLKFHKKHRELVIQSYLKHVLKEGKEIKVNQRRRKLYTNGTGNRWLIHRQSTMWSEVYFEHPATFDTIGMDPEKKQEIIEDLLTFSQSKEYYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELRKLLIETTSKSIIVIEDIDCSLELTGQRKVKKEESSKEEEKIKEKIIKEPKKEEEDMRSRVTLSGLLNFIDGIWSACGGERLIVFTTNHVEKLDPALIRRGRMDKHIELSYCNYEAFKVLAKNYLNVETHELFEEIKEVIKDAKMTPADVAENLMPKSRQEEAETSLRRLIGSLEEMKRAAEEKKKRKEEKSKESSSSQIVNDKESDD 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28354206 28355789 + CcPI632755_01g015640.1 Cco01g1564 170426

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1564 527 Coils Coil 479 513 - -
Cco01g1564 527 MobiDBLite consensus disorder prediction 1 26 - -
Cco01g1564 527 Pfam Domain associated at C-terminal with AAA 61 156 IPR025753 -
Cco01g1564 527 FunFam AAA-ATPase ASD, mitochondrial 232 426 - -
Cco01g1564 527 Gene3D - 231 426 IPR027417 -
Cco01g1564 527 MobiDBLite consensus disorder prediction 497 527 - -
Cco01g1564 527 Coils Coil 111 131 - -
Cco01g1564 527 PANTHER BCS1 AAA-TYPE ATPASE 46 502 IPR050747 -
Cco01g1564 527 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 133 480 IPR027417 -
Cco01g1564 527 Gene3D - 427 495 - -
Cco01g1564 527 SMART AAA_5 276 432 IPR003593 GO:0016887(InterPro)
Cco01g1564 527 CDD RecA-like_BCS1 255 428 - -
Cco01g1564 527 ProSitePatterns AAA-protein family signature. 400 419 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco01g1564 527 Pfam ATPase family associated with various cellular activities (AAA) 280 429 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1564 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1561 Cco-Chr1:28336220 Cco01g1564 Cco-Chr1:28354206 2.20E-164 dispersed
Cco01g1564 Cco-Chr1:28354206 Cco10g1462 Cco-Chr10:27739192 7.00E-142 dispersed
Cco01g1562 Cco-Chr1:28340465 Cco01g1564 Cco-Chr1:28354206 1.20E-162 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g477 . . . . . . . . Cmo13g00944 . . . . . . Cpe20g00212 . . . . . . . . . . . . . . . . . . . Lsi02g00331 Csa01g00805 Chy12g01312 Cme12g01737 . . . . . . . . Sed08g2559 . . Cma13g00919 Cma18g00135 Car13g00758 Car18g00127 Cpe09g01057 . Bhi08g01431 Tan05g2065 Cmetu12g1057 Lac10g0394 Hepe07g2269 . . Cla01g01413 Cam01g1479 Cec01g1518 Cco01g1564 Clacu01g1502 Cmu01g1395 Cre01g1315 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013815 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 2 1 2 1 0 25