Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1569 ATGGGGAAGGATTACTATAACATACTGAAAGTAAGCCGAAGCGCTAGCGATGAAGATTTGAAGAGAGCTTACAAGAGATTAGCCTTATTTTGGCATCCAGACAAGAACCCTTCTAACAAACAAGAAGCTGAGGCTAAGTTCAAGCAAATTTCTGAGGCTTATGATGTTCTTAGCGATCCTCAAAAGCGTCAGATCTACGACCTTTACGGTGAAGAAACCCTCAAGTCCGGCAAGATTCCGCCGCCCACGCCTCAAGCCACCTCCTCTTCAGCCTATTCTCCGGTTTACCAGCATTTTCAACGCCAGCATCCCAATACTTCCACCTTCAAGTTTAAACCCAGGAACGCCGATGATATTTACGCGGAATTTTTCGGATCCGAGGGCGGTGGCGGGAGCAATAATGTCGATGGGGGAGGGAAAAGTAGAGGGGTGAGGGATGAGTTTTTTAGGTTTCAGAATGGGACGGAGAATGGGAGTCGTGTTCAGGGGAAGAAAGCGGCTGCAGTTGAGAATACGTTGCCTTGTACCTTGGAGGAGCTCTATAAAGGCGCCAAAAAGAAGATGAGAATTTCGAGGAATGTTTATGATGTCTCTGGCAAGTTCCGGACGGTTGAAGAGATATTGACAATAGATATAAAGCCGGGTTGGAAGAAGGGGACAAAGATAACTTTTCCTCAGAAGGGAAATCAGGAGCCTGGCATCATTCCAGCAGATCTTATATTTGTAGTGGATGAGAAACTGCATGCTATATACCGGAGGGATGGGAATGATCTAGTGGTGAACCATGAAATAACGCTGCTGGAATCACTCACAGATATTGTCAAACCTGGTGATGAGATGGTTCTGGTAAATGAAGGAATGCCAATCTCAAAGGAACCTGGGAAGAAGGGTAATTTGAGAATCAAATTTGATGTCAAATATCCATCAAGACTTACAACAGAACAGAAGTCTGAATTGATAAGAGTTCTTGGTGTAGTTTCATAG 984 44.61 MGKDYYNILKVSRSASDEDLKRAYKRLALFWHPDKNPSNKQEAEAKFKQISEAYDVLSDPQKRQIYDLYGEETLKSGKIPPPTPQATSSSAYSPVYQHFQRQHPNTSTFKFKPRNADDIYAEFFGSEGGGGSNNVDGGGKSRGVRDEFFRFQNGTENGSRVQGKKAAAVENTLPCTLEELYKGAKKKMRISRNVYDVSGKFRTVEEILTIDIKPGWKKGTKITFPQKGNQEPGIIPADLIFVVDEKLHAIYRRDGNDLVVNHEITLLESLTDIVKPGDEMVLVNEGMPISKEPGKKGNLRIKFDVKYPSRLTTEQKSELIRVLGVVS 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28400096 28402648 + CcPI632755_01g015690.1 Cco01g1569 170431

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1569 327 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 324 IPR051339 GO:0005829(PANTHER)|GO:0051082(PANTHER)|GO:0051085(PANTHER)|GO:0051087(PANTHER)
Cco01g1569 327 FunFam Dnaj homolog subfamily b member 165 246 - -
Cco01g1569 327 CDD DnaJ 4 59 IPR001623 -
Cco01g1569 327 Gene3D - 269 325 - -
Cco01g1569 327 Gene3D DnaJ domain 2 136 IPR036869 -
Cco01g1569 327 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Cco01g1569 327 PRINTS DnaJ domain signature 42 62 IPR001623 -
Cco01g1569 327 PRINTS DnaJ domain signature 24 39 IPR001623 -
Cco01g1569 327 PRINTS DnaJ domain signature 62 81 IPR001623 -
Cco01g1569 327 PRINTS DnaJ domain signature 6 24 IPR001623 -
Cco01g1569 327 CDD DnaJ_C 169 311 - -
Cco01g1569 327 Pfam DnaJ C terminal domain 170 308 IPR002939 -
Cco01g1569 327 Pfam DnaJ domain 4 67 IPR001623 -
Cco01g1569 327 Gene3D - 167 246 - -
Cco01g1569 327 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Cco01g1569 327 SUPERFAMILY Chaperone J-domain 3 78 IPR036869 -
Cco01g1569 327 SMART dnaj_3 3 62 IPR001623 -
Cco01g1569 327 FunFam DnaJ subfamily B member 13 3 134 - -
Cco01g1569 327 SUPERFAMILY HSP40/DnaJ peptide-binding domain 170 248 IPR008971 GO:0006457(InterPro)|GO:0051082(InterPro)
Cco01g1569 327 SUPERFAMILY HSP40/DnaJ peptide-binding domain 251 318 IPR008971 GO:0006457(InterPro)|GO:0051082(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1569 K09510 - - csv:101215798 588.186
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1569 Cco-Chr1:28400096 Cco02g0257 Cco-Chr2:2386206 2.30E-98 dispersed
Cco10g0268 Cco-Chr10:2964342 Cco01g1569 Cco-Chr1:28400096 3.00E-15 transposed
Cco01g1569 Cco-Chr1:28400096 Cco05g2739 Cco-Chr5:35271672 1.50E-105 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g489 Blo04g00756 Blo16g00200 . . . Bpe13g00271 Bma06g00188 . Cmo13g00951 Cmo18g00102 . . . . . Cpe20g00207 . . . . . . . . . . . . . . . Cone2ag0864 Cone16ag0143 . . . Csa01g00799 Chy12g01317 Cme12g01743 . . Bda11g01684 Bda14g00836 . Bpe15g00616 Bma03g00809 . Sed08g2567 . . . Cma18g00131 Car13g00762 Car18g00123 Cpe09g01061 . Bhi08g01425 Tan05g2072 Cmetu12g0983 Lac10g0382 Hepe07g2276 . . Cla01g01417 Cam01g1483 Cec01g1522 Cco01g1569 Clacu01g1507 Cmu01g1399 Cre01g1319 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006344 2 2 2 2 2 1 2 1 1 1 1 1 0 1 1 2 1 2 2 1 1 1 1 1 1 0 1 3 1 0 38