Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1573 ATGGGCATGTTTGTTTTGGTTGTTTCATTGCTTTTACTATCAACCCTTTTCAGCTCTCGCACTTTTGCTCTCACTCCAGATGGCTTAACGTTGTTGGAAATTAGAAGCGCGTTTAATGATAGCAAAAACCTCCTTGGTGATTGGGAAGCTTCTGATGAACTTCCCTGCAAATGGTCTGGTATATCTTGTCACCCTGAGGACCAACGAGTTAGCTCAATTAACTTGCCTTACATGCAACTTGGTGGGTTCATTTCTCCCAGCATTGGTAAACTCAGTAGATTACAAAGACTGGCACTTCACGAAAATGGCTTACATGGAAATATTCCTAACGAAATCACTGAATGCACTCAGCTCAGAGCTCTGTATTTGAGGTCTAATTATCTCCAAGGTGGCATACCGTCGGATATTGGAAACCTTTCTGCTCTTTCAATACTGGATTTGTCAAGCAATTCGTTGAAGGGTGCTATTCCGTCATCCATTGGTCGTCTCTCGCTTCTGCGTCATTTGAATTTGTCCACAAACTTTCTCTCTGGGGAAATACCTGATTTTGGAGTTCTGAGCACATTTGGAAGCAATTCGTTCATTGGTAATCTAGATCTCTGCGGTCATCAAGTTAACAAGGCTTGCCGAAACTCACTGGGATTCCCTGCAGTGTTGCCCCATGCTGAAAGTGATCAAGCTTCTGTTCCTGCAAAAAAATCTTCACACTACGTCAAAGGGGTATTAATTGGTGCAGTGTCCACTATGGGTGTTGCACTTGTAGTGCTTGTTCCATTCTTGTGGATAAGGTGGCTATCAAAGAAGGAAAGAGCTGCCAAGAGATACACAGAAGTCAAAAAGCAAGTGGTTCATGAACCAAGCACAAAACTTATTACTTTTCACGGTGACCTACCGTACCCATCATGTGAGATCATAGAAAAGCTGGAGTCACTAGATGAAGAAGATGTTGTTGGTTCTGGAGGATTTGGCATTGTATACCGAATGGTCATGAATGATTGTGGAACATTTGCTGTGAAAAAGATTGATGGAAGCAGAAAAGGTTCAGATCAAGTGTTTGAGAGAGAGTTGGAGATTTTGGGTTGCATCAAACATATAAACTTGGTCAATTTGCGGGGATACTGTAGTCTTCCAACTTCAAAGCTTCTTATCTATGACTTTCTAGCAATGGGCAGCTTAGATGATTTTCTGCATGAACATGGACCAGAAAAACAGCCTTTGGATTGGAGAGCTCGTCTAAGGATAGCCTTCGGCTCTGCTAGGGGGATTGCATACTTGCATCATGATTGTTGTCCAAAGATCGTGCATCGTGATATTAAATCGAGTAACATTCTACTTGATGAAAATTTGGAGCCTCATGTATCAGACTTTGGACTGGCTAAGCTTTTGGTTGATGACGATGCTCATGTCACAACTGTTGTTGCTGGAACGTTTGGCTATTTGGCTCCAGAATACCTACAAAGTGGGAGGGCAACTGAAAAATCAGATGTTTATAGCTTTGGAGTTTTATTATTGGAGCTGGTGACTGGGAAGAGACCAACTGATCCATCATTTGTAAAGCGAGGCTTAAATGTTGTTGGTTGGATGCACACATTATTGGGAGAAAACAAAATGGATGAGATAGTTGACAAAAGATGCAAGGACGTTGATGCTGATACTGTAGAAGCAATTCTCGAAATTGCAGCCAAATGCACGGATGCCGACCCAGACAATCGGCCATCAATGAGTCAAGTTTTACAGTTTCTCGAGCAAGAAGTCATGTCACCTTGTCCTAGTGATTTCTATGAGTCTCAGTCTGATTATTCTTGA 1806 42.08 MGMFVLVVSLLLLSTLFSSRTFALTPDGLTLLEIRSAFNDSKNLLGDWEASDELPCKWSGISCHPEDQRVSSINLPYMQLGGFISPSIGKLSRLQRLALHENGLHGNIPNEITECTQLRALYLRSNYLQGGIPSDIGNLSALSILDLSSNSLKGAIPSSIGRLSLLRHLNLSTNFLSGEIPDFGVLSTFGSNSFIGNLDLCGHQVNKACRNSLGFPAVLPHAESDQASVPAKKSSHYVKGVLIGAVSTMGVALVVLVPFLWIRWLSKKERAAKRYTEVKKQVVHEPSTKLITFHGDLPYPSCEIIEKLESLDEEDVVGSGGFGIVYRMVMNDCGTFAVKKIDGSRKGSDQVFERELEILGCIKHINLVNLRGYCSLPTSKLLIYDFLAMGSLDDFLHEHGPEKQPLDWRARLRIAFGSARGIAYLHHDCCPKIVHRDIKSSNILLDENLEPHVSDFGLAKLLVDDDAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFVKRGLNVVGWMHTLLGENKMDEIVDKRCKDVDADTVEAILEIAAKCTDADPDNRPSMSQVLQFLEQEVMSPCPSDFYESQSDYS 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28443333 28447896 + CcPI632755_01g015730.1 Cco01g1573 170435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1573 601 SUPERFAMILY L domain-like 26 208 - -
Cco01g1573 601 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Cco01g1573 601 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 387 592 - -
Cco01g1573 601 SMART serkin_6 311 586 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g1573 601 ProSitePatterns Protein kinases ATP-binding region signature. 317 340 IPR017441 GO:0005524(InterPro)
Cco01g1573 601 Gene3D Ribonuclease Inhibitor 26 211 IPR032675 -
Cco01g1573 601 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
Cco01g1573 601 Pfam Leucine Rich Repeat 117 139 IPR001611 GO:0005515(InterPro)
Cco01g1573 601 Pfam Leucine Rich Repeat 166 182 IPR001611 GO:0005515(InterPro)
Cco01g1573 601 SUPERFAMILY Protein kinase-like (PK-like) 291 582 IPR011009 -
Cco01g1573 601 Pfam Protein kinase domain 314 579 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g1573 601 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 24 186 - -
Cco01g1573 601 ProSiteProfiles Protein kinase domain profile. 311 586 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g1573 601 Gene3D Transferase(Phosphotransferase) domain 1 387 591 - -
Cco01g1573 601 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 180 584 IPR050647 -
Cco01g1573 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g1573 601 Gene3D Phosphorylase Kinase; domain 1 270 386 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1573 Cco-Chr1:28443333 Cco11g1766 Cco-Chr11:30386896 2.10E-81 dispersed
Cco11g0759 Cco-Chr11:8496364 Cco01g1573 Cco-Chr1:28443333 5.70E-50 dispersed
Cco05g1804 Cco-Chr5:26790244 Cco01g1573 Cco-Chr1:28443333 1.50E-67 transposed
Cco07g1207 Cco-Chr7:25920468 Cco01g1573 Cco-Chr1:28443333 2.70E-135 transposed
Cco11g1674 Cco-Chr11:29582767 Cco01g1573 Cco-Chr1:28443333 1.70E-137 transposed
Cco01g1573 Cco-Chr1:28443333 Cco06g1843 Cco-Chr6:28696661 4.90E-216 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86523 PF00069 Pkinase 7.40E-47 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1573 - - - 0.0