Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1579 ATGAGAGAAACAGAAACCACCATTATTGTTGTGATTAAACTGCTAATGATATTTGGTTTTGTAATGAAATTTCAAACTCTAAAGGCTAATATTGCAGATTTTGATGAGGTGTGGCAGAAAAGAGCTGAAGAAGCCAAGAAGGCTTCCTTTAAGGCCTACAAATCCCATCCAGAAGAAGTCACTAGTAATTTCAACAACCAAGTTCACAGATACTTTGATGCTGCAAATAACACAAGGAGACATTTGAGGAAGTACAATGGTCCATGTTTAGCCACGAATCCGATTGATCGTTGTTGGAGATGCGATAAACATTGGGCTAAAAATCGGAAGAAGCTAGCCGATTGTGCACTTGGGTTCGGTCGTGGAACAACTGGAGGCAAAAATGGAAGGATTTATGTGGTCCGAGATTCGAGCGATAACGACATGTTGAATCCTAAACCAGGAACCCTACGCTATGGTGTGATACAAGATAGACCACTTTGGATCATATTTGCACATGACATGGTGATTAGGCTAAGTGAAGAGCTTATAATGACCGATAACAAGACATTAGATGGTCGTGGTGCCAATGTACACATTGCTAATGGTGGTCAAATTACTCTACAATTTGTGAACAATATAATCATCCATAACCTTCACATTCATGATATCAAGGCTGGCAATGGTGGCCTTATAAGAGACTCGGTGAACCACTATGGATTGCGAACACCAAGCGATGGTGATGGAATCTCCATGTTTGGAGCCTCAAAGATTTGGATAGATCATGTTTCTATGTCTAATTGTCAAGATGGGCTTATCGATGCGGTCATGGCATCTACTGCCATTACCATTTCCAACTGTCACTTCACCCATCATAACGATGTGATGTTATTAGGTGCAAGTGATAGCTACTCGAATGATCAGATAATGCAGGTAACTCTTGCATTTAATCACTTTGGTAAAGGGTTGGTGCAAAGGATGCCGAGATGTCGATGGGGGTTCGTCCATGTGGTCAATAATGACTACACTCATTGGCTTATGTACGCTATCGGGGGCAGCCACAACCCCACCATTATCAGCCAGGGCAACCGTTTCATTGCCCCACCAAACCCAAATTCCAAAGAGGTAACAAAAAGGGCGTATGCGTCCGAAAGCGAATGGAAATCTTGGAACTGGAGGTCAGAGGGAGATCTGATGATGAATGGAGCTTTTTTTATCCAATCTGGGAACCCCATCAAAAGATACTCCAAGAAAGACGTTATACATTCGAAACCCGGGACCTTCGTCACCAGGCTAACACGATTCGCTGGCCCTTTGAAATGCAGAAAAGACCAACCCTGTTAG 1323 42.78 MRETETTIIVVIKLLMIFGFVMKFQTLKANIADFDEVWQKRAEEAKKASFKAYKSHPEEVTSNFNNQVHRYFDAANNTRRHLRKYNGPCLATNPIDRCWRCDKHWAKNRKKLADCALGFGRGTTGGKNGRIYVVRDSSDNDMLNPKPGTLRYGVIQDRPLWIIFAHDMVIRLSEELIMTDNKTLDGRGANVHIANGGQITLQFVNNIIIHNLHIHDIKAGNGGLIRDSVNHYGLRTPSDGDGISMFGASKIWIDHVSMSNCQDGLIDAVMASTAITISNCHFTHHNDVMLLGASDSYSNDQIMQVTLAFNHFGKGLVQRMPRCRWGFVHVVNNDYTHWLMYAIGGSHNPTIISQGNRFIAPPNPNSKEVTKRAYASESEWKSWNWRSEGDLMMNGAFFIQSGNPIKRYSKKDVIHSKPGTFVTRLTRFAGPLKCRKDQPC 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28487067 28488786 + CcPI632755_01g015790.1 Cco01g1579 170441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1579 440 SUPERFAMILY Pectin lyase-like 93 431 IPR011050 -
Cco01g1579 440 Pfam Pectate lyase 178 358 IPR002022 -
Cco01g1579 440 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Cco01g1579 440 PRINTS Pollen allergen Amb family signature 341 360 IPR018082 -
Cco01g1579 440 PRINTS Pollen allergen Amb family signature 115 132 IPR018082 -
Cco01g1579 440 PRINTS Pollen allergen Amb family signature 175 191 IPR018082 -
Cco01g1579 440 PRINTS Pollen allergen Amb family signature 239 260 IPR018082 -
Cco01g1579 440 PRINTS Pollen allergen Amb family signature 383 407 IPR018082 -
Cco01g1579 440 PRINTS Pollen allergen Amb family signature 139 164 IPR018082 -
Cco01g1579 440 PANTHER PECTATE LYASE 18-RELATED 18 436 IPR045032 GO:0030570(InterPro)
Cco01g1579 440 Pfam Pectate lyase, N terminus 30 82 IPR007524 GO:0030570(InterPro)
Cco01g1579 440 Gene3D - 92 433 IPR012334 -
Cco01g1579 440 SMART amb_all 167 364 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1579 Cco-Chr1:28487067 Cco10g1473 Cco-Chr10:27827807 3.20E-180 dispersed
Cco01g1579 Cco-Chr1:28487067 Cco05g2722 Cco-Chr5:35129545 1.30E-176 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1579 K01728 - csv:101218812 819.69