Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1580 ATGGATCAACATCTTCACCATCACCAACAATGGCATCCCAGGCCAATCCAAGCCACTGTCTGTCCAATTTGCGCAATGCCCCACTTCCCCTTTTGCCCTCCCCATCCATCCTTCAACCAAAACCCTAGATATCCCTTCGGCCCCGATCCCTCTTTTCAAACCCCCGGTTTCGACTCTCATCGTTCACCCATGGGGATGCCGCCCCCGTATATGGGGAATCCTGACGATGGTTTCGCAGATCAGAGGCCGTGGATTAGAAATTCTGCCAATTCATATGGGCATGTCCCCTTCCACCCTCACAGAGAAGGGGTTTTCCCGCCACCGTATGATTATGGCGGCAATGAGTTCGTAAACGACGCTGAAAGAAGCTACAAGCGGCCGAGGGTTGATGATGTGGGTACGGATGGCGTTGTTCATGAGGTTAATCAGTATCAGAAGAGCGGCAGGAGTTCATTCGAGGATGAACGTCGGTTGAAGTTGATTCGTGACCATGGAGTTGTATCGAGTGGACCGCCTGAAGGTGGTTCTAATTCCTTGCCGAGAATGAATTTGGGTTCTAATAGCGAAGCAAGCAGATGCAATCTCGAAAATTCAGTGGGATCTGCGGACCCGGAAGAAGTCGGCAATACGAGAATCTTGGAAACTAATAACTTTCAAGATCCGGGTAATGGCAATAATGATGGAAGAACTCAACACTTCCACGAGAATGGTAGAATTGACACGCGGCGGCCTTCCCAAAACGAAGAATTTTCACATGCTCGTTATGATCATGTTGGAGGCCATTGGCATATGCGGCACTCTGTTCCTCCTGAAGCCACCGAAGATAACTATCTTTCTCATAGAAACGAATTGCATTATTCTGATAAACGGCAAGCATTTTCCTGGATGGATGATAGAAATAAGAGCAAAATGAACATTCTTGATCGTGATTATCAGCCACCCCCTCGCTCTGAGATGAATTCCATCCATATGAGACCGTTTTCATCGCACGGAAATGCTCATCATGGTACTCGAAACTTGAATTTTGGTGCTGGATATGCTCCACGGCTTTCTGGGGGTGGCAGGTTCTTGGAAAATGGAAGCTCAATTGAAGATTCTCGCTTCTTTGGTGAGCAACCCCCTCTTCCTGCTTCTCCACCACCGCCTATGCCTTGGGAAGCACACTTGCACGGTTCAGCAGAGTCTATGGCCTATTCTTCTCAAGCAAAACCTTCATCCCTGTTTCCTGTTCCTGTTAGTACCTCAACAATAACGTCATCAGCATATTCTTCAGTTCCTGAACACCGTTCCTTTCACCACCATAAACCAATGCCTCATGTTTCTTCTAGCCCTATGATGGAGGATTCTCTGGCATTGCACCCATATTCTAAGAAGTTTGCTGCAGACGGCAAACCTTTTGGATTGAATCAATTGCCTCCGCAAAAACCCAAAGTTATTGATGCCTCACATTTATTCAAGCTACCTCATCGGTCTACTCGTCCAGATCATATTGTGGTTATCCTTCGAGGGCTTCCAGGTAGTGGAAAAAGCTATTTGGCAAAGATGTTGCGTGATGTTGAAGTTGAAAATGGTGGTGATGCTCCTCGTATACATTCTATGGACGATTACTTCATGACAGAAGTGGAAAAGGTTGAGGATGGTGATGCCAAATCATCAAATTCAATTAAAGGCAAGAAGCCAATCATGAAGACGGTCATGGAATATTGTTACGAACCTGAAATGGAGGAGGCTTATCGGTCAAGCATGTTGAAAGCATTCAGGAAGACCCTTGAGGAGGGGATATTCACCTTTGTAATTGTGGATGACCGCAATCTGCGGGTAGCTGATTTTGCTCAGTTTTGGGCAATTGCAAAGAGTTCGGGCTATGAAGTTTACATTTTGGAAGCTACGTATAAGGACCCTGCGGGCTGTGCAGCAAGGAATGTGCATGGGTTTAACCTCGATGATATACAAAAGATGGCTAGACAATGGGAAGAAGCTCCGCCTTTGTACTTACAATTGGACATCAAGTCCTTATGTCATGGGGATGACCTTAAAGAAAGTGGAATTCAGGAGGTTGACATGGATATGGAAGAGGATGACGATGGTAGTCCTAGTTTTCAAGAAACGAAGTCTGAGAAGACAGCATTACCCCCTTCAAGAGATGATGCTTCTGAAGATGATGAGAAGAGATGGGATACAGAACCGGACCATCTGAGAGAGGAAGTAAAAGAGTTAGGTAGGAGTAAATGGTCAAATGATTTAGATGATGACGATACAGAAAGAACTGATGGCCTGAACGGTCATGCGAATGCTCTTTCTGGTCTGATTCAAGCATACGCCAAAGAAGGAAAGTCGGTGCGCTGGATGGATCAGATTGGTAATACCGGATTCTCAATCGGAGCCGCAAAAAAGGCAAACAGATTATCTTTAGTAATTGGTCCTGGTGCTGGATATAACCTGAAATCCAACCCATTAGCAGAAGAAGAATACCGTGGCTCAACACAAAACAGCAGTGAGTCAAAGAAACACAGCAGATTTGAGGAGGGATTGCGGGCAGAAAGTGAATCATTCAAAGTTGTTTTCGATAAAAGGCGACAAAGGATAGGAGGACTTGATTGGGAAGAGGAATAG 2613 45.69 MDQHLHHHQQWHPRPIQATVCPICAMPHFPFCPPHPSFNQNPRYPFGPDPSFQTPGFDSHRSPMGMPPPYMGNPDDGFADQRPWIRNSANSYGHVPFHPHREGVFPPPYDYGGNEFVNDAERSYKRPRVDDVGTDGVVHEVNQYQKSGRSSFEDERRLKLIRDHGVVSSGPPEGGSNSLPRMNLGSNSEASRCNLENSVGSADPEEVGNTRILETNNFQDPGNGNNDGRTQHFHENGRIDTRRPSQNEEFSHARYDHVGGHWHMRHSVPPEATEDNYLSHRNELHYSDKRQAFSWMDDRNKSKMNILDRDYQPPPRSEMNSIHMRPFSSHGNAHHGTRNLNFGAGYAPRLSGGGRFLENGSSIEDSRFFGEQPPLPASPPPPMPWEAHLHGSAESMAYSSQAKPSSLFPVPVSTSTITSSAYSSVPEHRSFHHHKPMPHVSSSPMMEDSLALHPYSKKFAADGKPFGLNQLPPQKPKVIDASHLFKLPHRSTRPDHIVVILRGLPGSGKSYLAKMLRDVEVENGGDAPRIHSMDDYFMTEVEKVEDGDAKSSNSIKGKKPIMKTVMEYCYEPEMEEAYRSSMLKAFRKTLEEGIFTFVIVDDRNLRVADFAQFWAIAKSSGYEVYILEATYKDPAGCAARNVHGFNLDDIQKMARQWEEAPPLYLQLDIKSLCHGDDLKESGIQEVDMDMEEDDDGSPSFQETKSEKTALPPSRDDASEDDEKRWDTEPDHLREEVKELGRSKWSNDLDDDDTERTDGLNGHANALSGLIQAYAKEGKSVRWMDQIGNTGFSIGAAKKANRLSLVIGPGAGYNLKSNPLAEEEYRGSTQNSSESKKHSRFEEGLRAESESFKVVFDKRRQRIGGLDWEEE 870
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28490024 28497106 - CcPI632755_01g015800.1 Cco01g1580 170442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1580 870 FunFam YLP motif-containing protein 1 isoform X3 497 661 - -
Cco01g1580 870 MobiDBLite consensus disorder prediction 689 762 - -
Cco01g1580 870 PANTHER YLP MOTIF CONTAINING PROTEIN NUCLEAR PROTEIN ZAP 243 860 IPR026314 GO:0005634(PANTHER)|GO:0005634(InterPro)|GO:0032204(PANTHER)
Cco01g1580 870 MobiDBLite consensus disorder prediction 708 758 - -
Cco01g1580 870 MobiDBLite consensus disorder prediction 210 230 - -
Cco01g1580 870 MobiDBLite consensus disorder prediction 828 844 - -
Cco01g1580 870 MobiDBLite consensus disorder prediction 815 844 - -
Cco01g1580 870 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 498 659 IPR027417 -
Cco01g1580 870 Gene3D - 497 661 IPR027417 -
Cco01g1580 870 MobiDBLite consensus disorder prediction 231 247 - -
Cco01g1580 870 Pfam AAA domain 498 630 - -
Cco01g1580 870 MobiDBLite consensus disorder prediction 186 247 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1580 K17602 - - csv:101218580 1590.86
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g513 Blo04g00760 . . . . . . . . Cmo18g00096 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00309 Csa01g00789 Chy12g01327 Cme12g01754 . . . Bda14g00840 . Bpe15g00612 Bma03g00817 . Sed08g2575 . . . Cma18g00125 . Car18g00114 Cpe09g01068 . Bhi08g01412 Tan05g2085 Cmetu12g1842 Lac10g0369 Hepe07g2285 . . Cla01g01427 Cam01g1494 Cec01g1534 Cco01g1580 Clacu01g1518 Cmu01g1410 Cre01g1328 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005368 1 1 1 7 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 3 1 40