Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1583 AATGGTAGAATAATAGGGGTTTTTGTTGAAGTGGGCACATTGAGTGAGGTGGAGCTTAACGTATCAGCAATGGGGAAGTCGCCAGGGAAATGGATCAAGACCATCTTGTTTGGGAAGAAGTCTTCCAAATCTAATCTTTCTAAGAGCAGAGAGAGAAATGGAAATGAGAAAGAAGTATTGGTTTCTGCCAACGCATCAGAAAATACTACTGTTATTAGTCATCCTGTAGCTTCACATCCAACCCCAAATACCATAGATACAAATGAAGGGGTGCCAAAAATTACTAACAATGAAGCAGCTAATGTGTTGCATGAAAGATCAGTATCAATTCCAGGAAATCAAGATGCAGAAATTCAAGGACCTACCTGCCAAGATGCACCATCTGATCCTGAGAGAATCCGTGAAGAGGAGGCTGCAACTAAGGCTCAAGCTGCTTTTAGGGGTTATTTGGCTCGCCGAGCATTCCGGGCCCTCAAAGGTATTATTAGGTTGCAGGCGCTTATTCGTGGTCATTTGGTAAGGAGACAGGCTGTTGCTACTCTATGTTGTATGCTTGGAATTGTTAAGTTCCAGGCTATTGCTCGGGGAAGAAGAGTGAGGCTTTCTGATGTAGGGCTTGAAGTGCAGAACAAATGTAGATTAGTGCAGATACAGGATCAACCACTAGCAGATCCTGCTGGCGTAAGTCTTTCTACACGAATGGCAAAGCTTTCTGCAAATGCTTTCACTATCAAGCTTGCTTCATCTACAACTTCAAAACCTATGCAACTCTATTTTGATACTGAAGCTGAAAATTCAGTCTTGAAATGGTTAGAACGCTGGTCAAATTCTAGGTTTTGGAAACCAATTCCCCAAGTAAAAAAAGCTCCCGAGTCTAAATCTCAAAGAAGGCTGAGCGCTGGTCAAACTGGAGAGGCACATACCGTGAGATCAAAGCGCACAAGGAGAGTTCCTACTGCAAACAATGACAGTGCTGCTGTCCAATCATCTACAGAATTTGAGAAACCCAAACGGAATTTTAGGAAAGTCTCTAGTCATTCAGCCGCCGAGCAGGTTCAAGAGAATCCCCAGATGGAGCTCGAAAAGGTCAAGCGTAGTCTGAGAAAGGTCCATAACCCCGTCCTTGAGAATCCTGCCCAAACAGAAGTTGATGCTGAGAAGCCCAAGGAAAGTTTGGAGAAGGCTTCTAATGGTCTAAGCCGTGACGTTTTGGCGAGAGGTACTAGTAATTCTTCTGAGAAGATGAAAAAAGAGGCAATCTCAACAAATCCCCTCCAGCCTGATTTGGAAACAACTCCTGAGCCGTTACCAACTAAAGAGATAGTTAATGTACCTATCAGTGATCCAGTTGTAGATTCACAGCCTTTGATTGAGAGCAGTGACAAGGATAAAAGCATTGCTGGAGATGAGGCTGCTGGGGAGACTCAGCCTTTGACAGAGAGCTACACTAAAGATGAAATCAACCCATTACCAAATGGGGAATCGAACCACAAGGAAGATCATACTAACAACGAGAATCCGAAATCTGGCAGGAAATCCTCTACTCCAGCCAAGCAAGAGCGAGTGGAGAATGGGCTGCAGCACAGTCCAACCTTACCTAGCTACATGGCAGCAACTGAATCTGCTAAGGCAAAACTGAGAGCACAAGGATCTCCAAGATTTGGACAGGATAGTGAAAAAAATAACAACCTCAACCGACGTCATTCTTTACCGTCACCCACTAATGCTAAAATTAGCTCACAGTCTCCACGAACACAAAGACTCGTTCAAGCAGGTGGCAAAGGAGGAAACAAAAATGACAAGGCACTTCTGGGATCAAGAGATGGAAATGGAAAGGTAATCCAAGCAGACTGGAGAAGGAAAAGGCTTCGGCTGCTCGAACAGAAGAACATACCAATCTTTGTCGCTGAATTTGAGCTCATATGGCCGAATTTCGTTGATTCAATGGAAGAATTTCGGTTTTTTGTTTTCGGTGAAGAAATTCCATACGGAAATCTTCGCCTTCGTTCCCGCTGGTGGCGAAATTCAAATCTTCCGGTTTCGATATCAATGGCGAATACACCAATTGAAGCCGCAACCTTCTGGACCCAAGCAAATGCTCTCCTAAGGAAAAACTTAACCTACCAGAAACGAAATTTGAGGACAAATATTCGTCTGATTTCCTTCCCGTTCATCCTCTGTTTATTACTCGTTCTACTTCAAAAAATAGTCAACAACGAATTGGATAAGCCGAAGAACAATTGTGGTTGTGTTTGTGTTGATAAGAATGGAGATGGTGTATGTGAGAAAGTTTGTGGGTTAGAGTACTCAACTTTGATACAAGCAGTGAGCTGCCCCATTCCAAGTCCTCCACAATGGCCTCCAATATTGCAAATGCCTGCTCCTCATTTTCGTGCTGTGCGAACAGATTTTTTTCCATATGAAGACTTGCCAAATGAATCATGCAGGGAATCAATGTCATGTCCTGTTACTATGCTTTTCACTGGAAATAATCGCTCTCTTGGAAATATTTTGGCTGCAAGTATGGTCCCAAGTTCTTTGTCTTGGAACTCTTCTGATGTTCTATATGGTGCATCGCTTAACGTTTTGGGATCAGCATCGAGGCCTAGAACAAACAATTATCTTGATCCTGCTTTCTTTTCAAACCTTCCTTTATATTATATGCAACGTCAGTGTGTGACAGGCTCGACATTGTCCATTCCTGTTTCAATATTCTCTCTTACAAAGACACAAGATATTGCATGTGTTCAAGGTCTACAATTGTGGCGCAATAGTTCTTCAGAGGTGAATGATGAGATATACAGAGGTTACAAAAACGGGAATTCAGAGGGGAAAATCAATGAGATTCTTTCAGGTTTCGATTTCTTAAATTCTGATGGGAACAATTTTAATGTGACTATATGGTATAATTCATCATATAAGAGTGACATCGGCCGTTCTTCGAATGTTCTGTTGCGGGTTCCACGCTTGGTTAATCTGGCATCCAATGGCTATCTTAAGTTTTTGCTAGGAGCAAGCACGGAGATGCTCTTTGAGTTTGTCAAAGAAATGCCGAAACCTGCAACAAAGATCAGGCTGGATTTCTCTTCTCTACTTGGTGCACTCTTTTTTACGTGGGTCATCCTCCAGCTTTTTCCAGTTATCTTGACATCTTTGGTATATGAGAAGCAACAGAAACTGAGATTCATGATGAAAATGCATGGGCTTGGTGATGGGCCTTATTGGATGATTTCGTATGCTTATTTTCTCACAATTTCTGCAGTATACATGTTTTGTTTTGTGTTGTTTGGTTCAGTTATAGGGCTAAAGTTTTTTACAATGAATGACTACAGTATCCAGTTTGTGTTCTATCTCTTATTTATAAATTTGCAAGTCTCCCTGGCCTTTCTAGTGGCTGCCATGTTTTCAAATGTCAAGACTGCTGAAGTTTCAACATATATATGTGTCTTCGGAACAGGGCTCTTAGGTGGATTTCTCTTCCAGTTTTTTATTGAAGATCCATCATTCCCACGTGGCTGGATCATGGTGATGGAGTTATATCCTGGATTTTTGCTGTATCGTGGGTTGTATGAGTTTGCATTTTATTCTTTCACTGGGAATCTAATGGGGACTTATGGGATGCGCTGGGGAGATTTGACCGATAGTACTAATGGAATGAGAGAAGTCTTGATCATTATGCTTGTTGAGTGGATAGTGGTGCTTCTAGTTGCATATTGTATCGACAAAGTTTTATCATCGGGAAGTTGGAAGTGTGCATTATTTTTCCTCCAAAGACATGACAAAAAACCTCCACCTCAGAATCCTGGTTTGGAAAGGCAAGGTTCAAAAGTTTTGGTTCAAACTGATAAACCTGATGTCAGACAAGAGAGGGAGAAGGTCGAAAAGTTGCTAAAGGAAGGAGATCCAAGTTATGCCATCGTTTCTGACCATCTCAAAAAGGTGTATCCAGGAAAGGATGGAAACCCTGAGCAGTTTGCAGTTAGAGGACTATCTCTTGCTCTGACTCGAGGAGAATGCTTTGGGCTGCTAGGTCCAAATGGTGCGGGAAAGACCTCCTTTATCAATATGATGATTGGTCTTATAAAACCAACCGCTGGAACAGCCTTGGTTGAAGGTCTGGACATAAGCACTGAGATGAATGGCATATACGCAAGCATGGGTGTTTGTCCACAGCATGACCTGCTATGGGAAACCTTAACAGGAAGGGAGCACCTACTCTTTTATGGCAGACTGAAGAATTTAAAAGGTTCTGCTTTAATACAAGCAGTGGAAGAATCTCTCAAGGGTGTCAACCTCTTCCATGGAGGAGTAGCAGAAAAACAAGCTGGGAAGTACAGTGGAGGTATGAAGAGGAGGCTTAGTGTTGCTATTTCACTAATTGGGGATCCTAAAGTTGTCTATATGGATGAGCCAAGCACCGGCCTAGATCCAGCTTCAAGAAAAAATTTATGGAATGTTGTGAAGCATGCAAAGCAAGATCGAGCAATCATCCTTACTACACATTCTATGGAAGAGGCGGAAGTCTTGTGTGATCGGATAGGAATTTTTGTAGATGGAAGCCTGCAGTGTATTGGAAATCCAAAAGAGCTTAAAGCCAGATATGGCGGGGCTTATGTATTTACAATGACAACATCCCCTGCTCATGAAGGACAAGTTGAGAACATGGTGAAGCATTTGGCCTCTGGAGCTAGCAAGATATACCACTTATCTGGAACTCAAAAATTTGAGCTTCCAAAACACCAAGTTCGGATCGCTGATGTGTTTCAAGCAGTTGAAAATGCCAAAAGCAGGTTTACAGTGTTGGCTTGGGGTTTGGCTGACACAACTTTAGAGGACGTCTTTATCAAAGTTGCTAACGGCGCCGAGTCTTCAGATATGCTTTCTTGA 4887 42.42 NGRIIGVFVEVGTLSEVELNVSAMGKSPGKWIKTILFGKKSSKSNLSKSRERNGNEKEVLVSANASENTTVISHPVASHPTPNTIDTNEGVPKITNNEAANVLHERSVSIPGNQDAEIQGPTCQDAPSDPERIREEEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLCCMLGIVKFQAIARGRRVRLSDVGLEVQNKCRLVQIQDQPLADPAGVSLSTRMAKLSANAFTIKLASSTTSKPMQLYFDTEAENSVLKWLERWSNSRFWKPIPQVKKAPESKSQRRLSAGQTGEAHTVRSKRTRRVPTANNDSAAVQSSTEFEKPKRNFRKVSSHSAAEQVQENPQMELEKVKRSLRKVHNPVLENPAQTEVDAEKPKESLEKASNGLSRDVLARGTSNSSEKMKKEAISTNPLQPDLETTPEPLPTKEIVNVPISDPVVDSQPLIESSDKDKSIAGDEAAGETQPLTESYTKDEINPLPNGESNHKEDHTNNENPKSGRKSSTPAKQERVENGLQHSPTLPSYMAATESAKAKLRAQGSPRFGQDSEKNNNLNRRHSLPSPTNAKISSQSPRTQRLVQAGGKGGNKNDKALLGSRDGNGKVIQADWRRKRLRLLEQKNIPIFVAEFELIWPNFVDSMEEFRFFVFGEEIPYGNLRLRSRWWRNSNLPVSISMANTPIEAATFWTQANALLRKNLTYQKRNLRTNIRLISFPFILCLLLVLLQKIVNNELDKPKNNCGCVCVDKNGDGVCEKVCGLEYSTLIQAVSCPIPSPPQWPPILQMPAPHFRAVRTDFFPYEDLPNESCRESMSCPVTMLFTGNNRSLGNILAASMVPSSLSWNSSDVLYGASLNVLGSASRPRTNNYLDPAFFSNLPLYYMQRQCVTGSTLSIPVSIFSLTKTQDIACVQGLQLWRNSSSEVNDEIYRGYKNGNSEGKINEILSGFDFLNSDGNNFNVTIWYNSSYKSDIGRSSNVLLRVPRLVNLASNGYLKFLLGASTEMLFEFVKEMPKPATKIRLDFSSLLGALFFTWVILQLFPVILTSLVYEKQQKLRFMMKMHGLGDGPYWMISYAYFLTISAVYMFCFVLFGSVIGLKFFTMNDYSIQFVFYLLFINLQVSLAFLVAAMFSNVKTAEVSTYICVFGTGLLGGFLFQFFIEDPSFPRGWIMVMELYPGFLLYRGLYEFAFYSFTGNLMGTYGMRWGDLTDSTNGMREVLIIMLVEWIVVLLVAYCIDKVLSSGSWKCALFFLQRHDKKPPPQNPGLERQGSKVLVQTDKPDVRQEREKVEKLLKEGDPSYAIVSDHLKKVYPGKDGNPEQFAVRGLSLALTRGECFGLLGPNGAGKTSFINMMIGLIKPTAGTALVEGLDISTEMNGIYASMGVCPQHDLLWETLTGREHLLFYGRLKNLKGSALIQAVEESLKGVNLFHGGVAEKQAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRKNLWNVVKHAKQDRAIILTTHSMEEAEVLCDRIGIFVDGSLQCIGNPKELKARYGGAYVFTMTTSPAHEGQVENMVKHLASGASKIYHLSGTQKFELPKHQVRIADVFQAVENAKSRFTVLAWGLADTTLEDVFIKVANGAESSDMLS 1628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28530131 28546033 + CcPI632755_01g015830.1 Cco01g1583 170445

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1583 1628 CDD ABC_subfamily_A 1310 1531 - -
Cco01g1583 1628 MobiDBLite consensus disorder prediction 370 606 - -
Cco01g1583 1628 MobiDBLite consensus disorder prediction 1264 1284 - -
Cco01g1583 1628 MobiDBLite consensus disorder prediction 285 358 - -
Cco01g1583 1628 Pfam ABC transporter 1328 1472 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco01g1583 1628 Pfam ABC-2 family transporter protein 932 1238 IPR013525 GO:0016020(InterPro)|GO:0140359(InterPro)
Cco01g1583 1628 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1306 1534 IPR027417 -
Cco01g1583 1628 FunFam ABC transporter A family member 7 1295 1571 - -
Cco01g1583 1628 ProSitePatterns ABC transporters family signature. 1445 1459 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco01g1583 1628 MobiDBLite consensus disorder prediction 491 507 - -
Cco01g1583 1628 MobiDBLite consensus disorder prediction 554 588 - -
Cco01g1583 1628 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 699 1619 IPR026082 GO:0005319(PANTHER)|GO:0006869(PANTHER)|GO:0016020(InterPro)|GO:0042626(PANTHER)|GO:0043231(PANTHER)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cco01g1583 1628 SMART iq_5 157 178 IPR000048 GO:0005515(InterPro)
Cco01g1583 1628 SMART iq_5 134 156 IPR000048 GO:0005515(InterPro)
Cco01g1583 1628 MobiDBLite consensus disorder prediction 402 429 - -
Cco01g1583 1628 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1306 1543 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco01g1583 1628 Gene3D - 1295 1567 IPR027417 -
Cco01g1583 1628 MobiDBLite consensus disorder prediction 318 333 - -
Cco01g1583 1628 Pfam Protein of unknown function (DUF4005) 502 595 IPR025064 -
Cco01g1583 1628 Pfam IQ calmodulin-binding motif 137 156 IPR000048 GO:0005515(InterPro)
Cco01g1583 1628 Pfam IQ calmodulin-binding motif 159 176 IPR000048 GO:0005515(InterPro)
Cco01g1583 1628 MobiDBLite consensus disorder prediction 476 490 - -
Cco01g1583 1628 MobiDBLite consensus disorder prediction 66 90 - -
Cco01g1583 1628 ProSiteProfiles IQ motif profile. 135 163 - -
Cco01g1583 1628 MobiDBLite consensus disorder prediction 508 536 - -
Cco01g1583 1628 Gene3D - 133 182 - -
Cco01g1583 1628 ProSiteProfiles IQ motif profile. 159 181 - -
Cco01g1583 1628 SMART AAA_5 1336 1519 IPR003593 GO:0016887(InterPro)
Cco01g1583 1628 MobiDBLite consensus disorder prediction 382 396 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1583 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1583 Cco-Chr1:28530131 Cco06g1836 Cco-Chr6:28644687 1.00E-74 dispersed
Cco03g1085 Cco-Chr3:19191793 Cco01g1583 Cco-Chr1:28530131 3.20E-07 transposed
Cco10g0473 Cco-Chr10:5641263 Cco01g1583 Cco-Chr1:28530131 3.30E-11 transposed
Cco11g1658 Cco-Chr11:29430355 Cco01g1583 Cco-Chr1:28530131 8.40E-10 transposed
Cco01g1583 Cco-Chr1:28530131 Cco06g1835 Cco-Chr6:28634839 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g521 Blo04g00761 Blo16g00193 . . . . . . Cmo13g00963 Cmo18g00095 . . . . . Cpe20g00197 . . . . . . . . . . . . . . . Cone2ag0858 Cone16ag0154 . . . Csa01g00786 . Cme12g01757 . . Bda11g01691 . . . . . Sed08g2583 . . Cma13g00933 Cma18g00123 Car13g00773 Car18g00113 Cpe09g01069 . Bhi08g01405 Tan05g2090 Cmetu12g0772 . . . . Cla01g01430 Cam01g1498 Cec01g1538 Cco01g1583 Clacu01g1521 Cmu01g1413 Cre01g1331 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001221 4 5 2 3 3 2 0 2 2 2 2 2 3 2 2 3 2 1 3 2 2 2 3 2 2 2 2 3 8 2 75