Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1605 ATGCCGCCGAGACGATATGCCGTTGGACGGGCCGATGAGGCCACTCACCCTGACTCCATTCGAGCCACCTTGGCTGAGTTCATTTCCACTTTCATCTTCGTTTTCGCTGGCGAAGGCTCTGTTCTCGCTCTTGATAAAATTTTCAGGCCAGCGGATTATGGAAGTTATGGCCATGGAAGTTACGGCCGAGGAGGACACGGTTACGGTCATGGTTATGGTTATGGTCGAAGGGGGGCCGACACGGGCAGAGCTGCGTCGGATTTAGTAGTGATAGCGATAGCGCATGCATTTGCGCTGTTCTCCGCGGTGGCGGCGAGTATCAATATTTCGGGTGGGCATGTGAATCCTGCAGTAACTTTTGGGGCTCTTCTTGGGGGGAGGATCTCTCTTATCCGTGCATTCTTCTATTGGGTTGCTCAGATATTGGGTGCCATTGTTGCTTCACTTCTCTTGAGACTCGCAACGGGTGGCATGAGGCCTATGGGGTTCTTTGTGTCATCAGGAATATCAGAATTACACGGATTTCTACTAGAGATAGTGCTTACATTTGCTTTGGTGTACACAGTCTACGCAACAGCAATTGACCCAAAGAGGGGGAGTTTGGGAACAATAGCACCACTGGCAATCGGGTTAATAGTCGGGGCCAATATTCTGGTGGGTGGGGCCTTCGATGGGGCCTGCATGAACCCTGCCAGGGCTTTTGGGCCGTCTTTAGTGGGCTGGAGATGGGACAATCATTGGATCTATTGGATCGGCCCATTATTGGGAGGTGGGCTTGCGGCCCTTGTATATGAGTACTTGGTTATTCCCGTTGAACCTCCTCTTCATACACACCAGCCCTTAGCTCCTGAGGATTACTGA 861 51.68 MPPRRYAVGRADEATHPDSIRATLAEFISTFIFVFAGEGSVLALDKIFRPADYGSYGHGSYGRGGHGYGHGYGYGRRGADTGRAASDLVVIAIAHAFALFSAVAASINISGGHVNPAVTFGALLGGRISLIRAFFYWVAQILGAIVASLLLRLATGGMRPMGFFVSSGISELHGFLLEIVLTFALVYTVYATAIDPKRGSLGTIAPLAIGLIVGANILVGGAFDGACMNPARAFGPSLVGWRWDNHWIYWIGPLLGGGLAALVYEYLVIPVEPPLHTHQPLAPEDY 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28740662 28742567 - CcPI632755_01g016050.1 Cco01g1605 170467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1605 286 Gene3D Glycerol uptake facilitator protein. 5 272 IPR023271 -
Cco01g1605 286 CDD MIP 21 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco01g1605 286 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco01g1605 286 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco01g1605 286 PRINTS Major intrinsic protein family signature 247 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco01g1605 286 PRINTS Major intrinsic protein family signature 132 151 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco01g1605 286 PRINTS Major intrinsic protein family signature 177 195 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco01g1605 286 PANTHER AQUAPORIN-8 5 276 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Cco01g1605 286 Pfam Major intrinsic protein 14 264 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco01g1605 286 FunFam Probable aquaporin TIP1-1 66 282 - -
Cco01g1605 286 ProSitePatterns MIP family signature. 113 121 IPR022357 -
Cco01g1605 286 SUPERFAMILY Aquaporin-like 13 277 IPR023271 -
Cco01g1605 286 NCBIfam MIP family channel protein 25 264 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1605 Cco-Chr1:28740662 Cco10g1977 Cco-Chr10:33302486 4.50E-74 dispersed
Cco01g1605 Cco-Chr1:28740662 Cco04g1150 Cco-Chr4:26865090 2.40E-80 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1605 K09873 - csv:101208863 495.738