Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1610 ATGAACAATTTGGGAATATTACTTTCTTTTCTTTTCATTCTCCTTGCCTCTACCGTGGTCCGCTTCTCCAGAGCCGACGCTTCGCCGGAGGCCGTCCGCGACATCGACGGCGATAAGCTCCGAGCCGGCGTCAATTATTACATCCTCCCTGTTATCCGCGGCAGAGGCGGCGGCCTAACCCTAGGCAACCTCCAGTCGGAGACATGTCCACTCAACGTGGTTCAAGAACAATTCGAAGTAATGAACGGCTTGCCTACAACATTTGCGCCTGTAAACCCTAAAAAGGGAGTGATTCGAGTTTCGACGGATTTGAATGTGCAATTCGAGGCAAGTACGATCTGCGCCACATCGACGGTGTGGAAATTGGACAAATTCGACGAATCGACTGGACAATGGTTCGTGACGATCGGCGGAAGCAGAGGAAATCCAGGGGTGGAGACGGTGGATAATTGGTTCAAAATTGAGAAGCACGGTCAGGATTACAAGTTGGTGTTCTGTCCGAGTGTATGCGATTTCTGTAAAGTGATGTGTAGAGATATTGGAATCTTCTTCAAGAATGGAAAGAGGGCTTTGACTTTGAGCGATACGCCATTCCCAGTTATGTTCAAGAAAGTTTGA 618 48.71 MNNLGILLSFLFILLASTVVRFSRADASPEAVRDIDGDKLRAGVNYYILPVIRGRGGGLTLGNLQSETCPLNVVQEQFEVMNGLPTTFAPVNPKKGVIRVSTDLNVQFEASTICATSTVWKLDKFDESTGQWFVTIGGSRGNPGVETVDNWFKIEKHGQDYKLVFCPSVCDFCKVMCRDIGIFFKNGKRALTLSDTPFPVMFKKV 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28813459 28814076 + CcPI632755_01g016100.1 Cco01g1610 170472

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1610 205 PANTHER KUNITZ TRYPSIN INHIBITOR 2 5 205 IPR002160 GO:0004866(InterPro)
Cco01g1610 205 Pfam Trypsin and protease inhibitor 32 204 IPR002160 GO:0004866(InterPro)
Cco01g1610 205 SMART kul_2 31 205 IPR002160 GO:0004866(InterPro)
Cco01g1610 205 CDD STI 31 204 IPR002160 GO:0004866(InterPro)
Cco01g1610 205 ProSitePatterns Soybean trypsin inhibitor (Kunitz) protease inhibitors family signature. 32 48 IPR002160 GO:0004866(InterPro)
Cco01g1610 205 PRINTS Soybean trypsin inhibitor (Kunitz-type) signature 31 60 IPR002160 GO:0004866(InterPro)
Cco01g1610 205 PRINTS Soybean trypsin inhibitor (Kunitz-type) signature 151 170 IPR002160 GO:0004866(InterPro)
Cco01g1610 205 PRINTS Soybean trypsin inhibitor (Kunitz-type) signature 69 89 IPR002160 GO:0004866(InterPro)
Cco01g1610 205 PRINTS Soybean trypsin inhibitor (Kunitz-type) signature 174 203 IPR002160 GO:0004866(InterPro)
Cco01g1610 205 Gene3D - 26 205 - -
Cco01g1610 205 SUPERFAMILY STI-like 28 205 IPR011065 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1610 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g941 . . . . . . . . . . . . . . . Cpe20g00182 . . . . . . . . . . . . . . . . . . . . . Chy12g01355 Cme12g01786 . . . . . . . . . . . Cma13g00957 . Car13g00794 . . . . . . . . . . Cla01g01457 Cam01g1524 Cec01g1565 Cco01g1610 Clacu01g1548 Cmu01g1438 Cre01g1360 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002445 5 4 0 5 2 1 1 1 1 1 1 1 1 3 3 0 1 2 1 1 1 2 1 3 8 2 1 1 1 6 61