Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1619 ATGTTTCATTCTTTAAGTAACTCGTCAAATCATGTCTGTTTAGAATTGCTTGGCATCTCACCAGTAAAACGTGCCATTATAAATGCTTATTATCTACTTGGAAAAAGGATCCCTGGATTCTCTTGGAACCAAGTCTTAGACCCAACTGTAATTGAATGGTACTACGAAATGAGAGTCATCCACAAATCATCATGTCCATGCCTTGAACGGTCCCCCCACCCCAGCTTCTCTATTCCTTGGTTTGATTTTGATATTGCTGGCATGAGGAACCTCAATGGTTCGAAGGCCCTTGGTTTCGGTCAAGACCTTGATAACCACCTTGAGAAATTTTTGCACAAGTCCGAACTGCCAAATATAGAAGGAACCATTTCACATATTGAAATGTTGTCTGCTTCACATGAAATCCTCGACACATATCGAGCTGAGGAATCTGATGTGGTTTTCAGATTTGGGGCTGGCTGGACGGAGAGTAACGGTAAGAAACGTATATTGATTCAGAAAACTTCCTATTCTTCTATGTCCCCGTCGAACAGTTCATCAAGTGGAGTTGGTGGACATGGAGGATCGAATTACATAGAGCATCAAATTTCCAGAATGGATACTCTCGCCGGAATCGCCATTAAGTATGGAGTCGAGGTGGCTGACATCAAGAGATTGAATGGCTTGGCAGCAGATCTTCAAATGTTTGCTTTAAAGAAACTGAGAATTCCTCTACCAGGCAGACATCCACCATCACCCAGCCTGTCTGATGCTTCCATCGTTACAGGAAATGGATCTGTAAATGAAGAACCTCTACATTTAGGCCAACCTACTAATATGCTAAACTCGTTGCAATCTTGGAGATTGAAATCACCTAAACAGAAAGCCTCCCCTGCCATGAGCACATTGCAAAAATACTATGGTCTAAGTTCACAAACTCTCGAGAACGCACCAGTAGACATGGAGACGTCAGTATACAGAACTGAAAATTCAAATTGCATTGGTGATGGGTTGTTTTCAAGAACCTCCATGCTTTCTACACCACCTCAAAACATTTACCCGAAAACCAGGAAATATGCTGGTAGTTTCTGGACCGAGAATGACTCAATAACCGAACATCTATTGCGTACAGAATCCGGAGATGGAGAGAATGAGAAATCTGATGAGAAACTGGTTCGCAGGCGTCAAAAGGCTGAAGTCGACAATGGTGTTACCACCCCAGAGAGGTCGTGGAAGGGTGAAAATAGTAGTGGAAGCTATTTTTCTCCTTCAAATGGAAAGAGTTTAGCCATGAGGCTAAAATCAGTTAGTAGAACAGTGCTGTCATCAGATTCAGATCCAGTGAGGATAAATTCCATTCCAGTAGGATTAGGAGATGCTATAATTACTGATGGGATTTCTGAAGTTCATAAATCATTAAGTACATCAAATCTGAGAGACCAAGATAACAGCAATTCAGCATCTGTGTGGTCAACTACAAAGTGGAGTTTGAAGCCGGACTTGCAAGCTCTTTCAAGTGCTGCAATCACAAAACCATTGTTTGATGGTTTGCCAAATCCAATCACAGGCCGCAGGAACAAAGCTGCTCTTGATTAA 1575 42.1 MFHSLSNSSNHVCLELLGISPVKRAIINAYYLLGKRIPGFSWNQVLDPTVIEWYYEMRVIHKSSCPCLERSPHPSFSIPWFDFDIAGMRNLNGSKALGFGQDLDNHLEKFLHKSELPNIEGTISHIEMLSASHEILDTYRAEESDVVFRFGAGWTESNGKKRILIQKTSYSSMSPSNSSSSGVGGHGGSNYIEHQISRMDTLAGIAIKYGVEVADIKRLNGLAADLQMFALKKLRIPLPGRHPPSPSLSDASIVTGNGSVNEEPLHLGQPTNMLNSLQSWRLKSPKQKASPAMSTLQKYYGLSSQTLENAPVDMETSVYRTENSNCIGDGLFSRTSMLSTPPQNIYPKTRKYAGSFWTENDSITEHLLRTESGDGENEKSDEKLVRRRQKAEVDNGVTTPERSWKGENSSGSYFSPSNGKSLAMRLKSVSRTVLSSDSDPVRINSIPVGLGDAIITDGISEVHKSLSTSNLRDQDNSNSASVWSTTKWSLKPDLQALSSAAITKPLFDGLPNPITGRRNKAALD 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28895802 28903245 - CcPI632755_01g016190.1 Cco01g1619 170481

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1619 524 Gene3D LysM domain 176 244 IPR036779 -
Cco01g1619 524 MobiDBLite consensus disorder prediction 368 417 - -
Cco01g1619 524 SMART LysM_2 193 237 IPR018392 -
Cco01g1619 524 MobiDBLite consensus disorder prediction 401 417 - -
Cco01g1619 524 MobiDBLite consensus disorder prediction 368 395 - -
Cco01g1619 524 ProSiteProfiles LysM domain profile. 192 236 IPR018392 -
Cco01g1619 524 SUPERFAMILY LysM domain 192 237 IPR036779 -
Cco01g1619 524 CDD LysM 192 236 IPR018392 -
Cco01g1619 524 Pfam LysM domain 200 237 IPR018392 -
Cco01g1619 524 PANTHER LYSM AND PUTATIVE PEPTIDOGLYCAN-BINDING DOMAIN-CONTAINING PROTEIN 173 477 IPR045030 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1619 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1619 Cco-Chr1:28895802 Cco09g0439 Cco-Chr9:3906572 2.00E-43 dispersed
Cco01g1619 Cco-Chr1:28895802 Cco10g1185 Cco-Chr10:24489563 3.30E-59 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g963 . . . . . . . . . Cmo18g00074 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00269 Csa01g00748 Chy12g01364 Cme12g01796 . . . . . . . . Sed08g2795 . . . Cma18g00098 . Car18g00087 Cpe09g01093 . Bhi08g01343 Tan05g2145 . Lac10g0322 . . . Cla01g01464 Cam01g1531 Cec01g1572 Cco01g1619 Clacu01g1556 Cmu01g1446 Cre01g1368 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012579 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 4 2 0 29