Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1620 ATGTCTTCGTCCGGTGGCAACTCTGGCGACGGAGCTGGCGGTGGCGCCGCCTCCCATGCCCCTCAGCTCTACTTCTGCTATACCTGCAATCGTACGGTAACCATTACGCCCTCATCATCCTCCGATCTTTTATGCCCCAACTGCAACGATAGCTTCGTTGAAGAAATGGAAAGCCCAAACCCTAACCCTAGCCCCGTTCCGAATCCTTTCCTCTCCTTCACATCCGAGGCATTTCCGCCGTTCAGCACCGGTGGCGGTGGAAGTGGCGGTTTCCCCATCATATTCTCCACGACATCATCATCCGGTGGCATTGGCGGTGGCGGTTCTATGATGAATGATCTATCAGCGCTATTGGGAGGCGGTTCTCTTCGATCGTCGTCCTTGCAAGACCCTGACGGTTTTAATCCCTTGCTCTTCCTCCAGAACTATCTTCAAAGCGCTAATGTTCAATTGGTAATCCAAAACGCCTCAGGAGAGGCGTTTCATCCCCCTTCCAATTTCAATCTTGGCGACTACTTCTTCGGCCCCGGCCTCGAGCAGTTGATTCAACAACTTGCTGAAAACGATCCGAACCGTTATGGAACCCCTCCCGCTTCAAAGTCGGCGATTGAGGCACTTCCAGATATCAAGATCACGGAGGAATTGTTGGCCTCGGATTCTTCGCAGTGCGCTGTGTGTAAGGATACGTTTGAGCTCAACGAGGTGGCGAAACAGATGCCTTGCAAACACATATATCATGCAGATTGTATAATTCCTTGGTTGGAATTGCATAATTCTTGTCCAGTATGTCGATATGAATTGCCCACAGATGATCCCGATTACGAGCAAAGGACTCGTGGGTCTACAGCTCCTAATCGAAGTCAAAGCGAAAGTCAACCCTTTGGCGATTCTGCCACTGGTGGGGAAATTGTTGGTGGAACCGATCCTAATTCCGACGAGAATTCACAGACTCAACAAATGGCAGAGCGGAGGGTTAGGAGGATAGCTTTTCCTTGGCCCTTCAGAGGTTTTGGTTCAGCCGCTGAGACTAGTAACAGCGGAGGTGGCAACAACAGTGGAAATAGTGACGAACCTAGCTCCAGAAATAGGGGAAGTCAGAGCTCTTCAGAGCCCATGCAGGAAGATCTCGATTGA 1134 50.79 MSSSGGNSGDGAGGGAASHAPQLYFCYTCNRTVTITPSSSSDLLCPNCNDSFVEEMESPNPNPSPVPNPFLSFTSEAFPPFSTGGGGSGGFPIIFSTTSSSGGIGGGGSMMNDLSALLGGGSLRSSSLQDPDGFNPLLFLQNYLQSANVQLVIQNASGEAFHPPSNFNLGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIEALPDIKITEELLASDSSQCAVCKDTFELNEVAKQMPCKHIYHADCIIPWLELHNSCPVCRYELPTDDPDYEQRTRGSTAPNRSQSESQPFGDSATGGEIVGGTDPNSDENSQTQQMAERRVRRIAFPWPFRGFGSAAETSNSGGGNNSGNSDEPSSRNRGSQSSSEPMQEDLD 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28903923 28905056 - CcPI632755_01g016200.1 Cco01g1620 170482

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1620 377 MobiDBLite consensus disorder prediction 269 377 - -
Cco01g1620 377 ProSiteProfiles Zinc finger RING-type profile. 223 264 IPR001841 -
Cco01g1620 377 Pfam zinc-ribbon 22 56 IPR039525 GO:0061630(InterPro)
Cco01g1620 377 MobiDBLite consensus disorder prediction 308 322 - -
Cco01g1620 377 SMART ring_2 223 263 IPR001841 -
Cco01g1620 377 MobiDBLite consensus disorder prediction 339 377 - -
Cco01g1620 377 SUPERFAMILY RING/U-box 205 271 - -
Cco01g1620 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 270 IPR013083 -
Cco01g1620 377 Pfam Ring finger domain 222 264 IPR001841 -
Cco01g1620 377 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 19 269 - GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Cco01g1620 377 CDD RING-H2_RNF126-like 222 264 - -
Cco01g1620 377 MobiDBLite consensus disorder prediction 278 296 - -
Cco01g1620 377 FunFam E3 ubiquitin-protein ligase RING1-like 184 270 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1620 K11982 - - csv:101205252 649.432
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1620 Cco-Chr1:28903923 Cco04g0684 Cco-Chr4:21330804 4.40E-37 dispersed
Cco01g0859 Cco-Chr1:9184047 Cco01g1620 Cco-Chr1:28903923 8.80E-60 transposed
Cco02g2595 Cco-Chr2:38210171 Cco01g1620 Cco-Chr1:28903923 1.10E-39 transposed
Cco04g0786 Cco-Chr4:23127430 Cco01g1620 Cco-Chr1:28903923 4.40E-30 transposed
Cco05g1824 Cco-Chr5:27048352 Cco01g1620 Cco-Chr1:28903923 4.10E-20 transposed
Cco07g0253 Cco-Chr7:2595050 Cco01g1620 Cco-Chr1:28903923 1.60E-09 transposed
Cco09g0353 Cco-Chr9:3133135 Cco01g1620 Cco-Chr1:28903923 9.30E-22 transposed
Cco11g0518 Cco-Chr11:5466997 Cco01g1620 Cco-Chr1:28903923 3.30E-30 transposed
Cco01g1620 Cco-Chr1:28903923 Cco05g2693 Cco-Chr5:34879954 2.20E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g964 . . . . Bpe12g00632 . . Bma12g01260 Cmo13g00999 . . . . . . Cpe20g00175 . . . . . . . . . . . . . . . . . . . . Csa01g00747 Chy12g01365 Cme12g01797 Blo13g00102 . . . Bpe07g01067 . . . . . . Cma13g00964 . . Car18g00086 Cpe09g01094 . Bhi08g01341 Tan05g2147 . Lac10g0321 . . . Cla01g01465 Cam01g1533 Cec01g1573 Cco01g1620 Clacu01g1557 Cmu01g1447 Cre01g1369 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004117 1 3 3 1 3 1 1 1 1 1 1 1 1 1 1 1 1 4 2 1 1 1 1 1 1 0 1 5 3 0 44