Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1625 ATGAATTTCTTCCGCCGAGGGTTCTACTGTGGCATGGATCATACAAAGCTCCAGAAGATGGCTGGTGCAGTTCGCACTGGTGGAAAAGGTAGCGTGAGAAGGAAGAAGAAGGCTGTTCACAAGACAACTACCACAGATGATAAACGGCTTCAAAGTACCTTGAAGAGAATAGGAGTTAATGCTATTCCTGCAATTGAGGAAGTTAACATTTTCAAGGATGACGTAGTTATTCAATTTACCAACCCGAAAGTTCAGGCTTCTATCGCGGCAAACACATGGGTTGTTAGTGGTTCTCCTCAAACGAAAAAATTGCAGGATATTCTGCCTGGAATCATCAACCAATTGGGGCCCGATAACTTGGACAATCTGAGGAAGTTGGCTGAGCAGTTCCAGAAGCAAGCACCTGGAGGAGGTGCTGGTGCTGCAGCAGCAGCCAATGCCGAGGACGACGATGACGATGTTCCTGACCTTGTCGAAGGGCAGACCTTCGAAGCTGCTGCAGAAGAGAATCAAGCCTCCTAG 522 47.7 MNFFRRGFYCGMDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPGGGAGAAAAANAEDDDDDVPDLVEGQTFEAAAEENQAS 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28934797 28938204 - CcPI632755_01g016250.1 Cco01g1625 170487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1625 173 SMART NAC_2 47 102 IPR002715 -
Cco01g1625 173 FunFam Transcription factor BTF3 homolog 59 115 - -
Cco01g1625 173 Pfam NAC domain 47 102 IPR002715 -
Cco01g1625 173 CDD NAC_BTF3 16 130 - -
Cco01g1625 173 MobiDBLite consensus disorder prediction 132 159 - -
Cco01g1625 173 PANTHER TRANSCRIPTION FACTOR BTF3 FAMILY MEMBER 10 170 IPR039370 GO:0005829(PANTHER)|GO:0005854(PANTHER)|GO:0042788(PANTHER)
Cco01g1625 173 Gene3D - 59 115 IPR038187 -
Cco01g1625 173 ProSiteProfiles NAC A/B domain profile. 44 108 IPR002715 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1625 K01527 - - csv:101204598 278.485
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1625 Cco-Chr1:28934797 Cco01g1848 Cco-Chr1:31038956 1.50E-64 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g977 . . Bda06g00836 . . . . Bma12g01254 Cmo13g01002 Cmo18g00069 . . . . . Cpe20g00045 . . . . . . . . . . . . . . . . . . . Lsi02g00262 Csa01g00514 Chy12g01570 Cme12g02028 . Blo15g00047 . . Bpe07g01061 . . . . . . Cma13g01108 Cma18g00092 Car13g00801 Car18g00082 Cpe09g01098 . Bhi08g01334 Tan05g2153 . Lac10g0316 Hepe07g2327 . . Cla01g01469 . Cec01g1577 Cco01g1625 . . Cre01g1374 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002043 5 3 3 2 3 1 4 2 1 1 1 1 4 2 2 3 1 3 4 1 1 2 2 2 2 2 1 4 2 1 66