Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1629 ATGCTGGCTGATCTCTCTTCTCCTTCACTTCCTTGTTTTGAGCCTTTGTCTAATTGCTTTGAAAACAATGGAACCAATAACAAAAGAAAAAGAAGACCTGCTGGAACTCCAGACCCCGATGCAGAGGTCGTTTCTCTCTCTCCAAAAACCCTATTGGAATCAGATCGTTACGTATGTGAGATCTGCAATCAAGGGTTTCAAAGAGATCAGAATCTACAGATGCATCGACGTAGACACAAGGTGCCATGGAAGTTATTGAAAAGAACGGAGGCGACGGCCGTAGTGAGAAAACGGGTGTTCGTTTGTCCGGAACCGAGCTGCTTACACCATAACCCTACTCATGCTTTGGGGGATCTGGTAGGGATAAAGAAGCACTTTAGAAGAAAACATAGTAACCATAAGCAATGGGTTTGTGAAAAATGCTCTAAAGGATATGCTGTTCAATCTGATTACAAGGCTCATCTCAAAACTTGTGGAACTAGAGGCCATTCTTGTGACTGTGGTCGAGTTTTCTCCAGGGTTGAGAGTTTCATAGAACATCAAGATAGTTGCAAATTGGGTCATCATCAACAACAATCAGAACAAAAAATTCCATGTCTATCTAGAACAGCTTCAAGTCCAACTCCAAGCCCTTCTTCAGATACAAATTTCAGCTTCTTAAAACAAAACCAAACATTTAGTACTACAATTGATCATCATCATCATGATGGAGCTGACAAATATTCAACAAAAACAACAATAATTCCCCCGAGAATTATTAGCCATAATCATCATCAAAATTTAGACCTTCAACTTTCCACAAATTCAACTTCCATTCATGTTTCAGTTTCTCCAAAAAGACACGAAAATTACTCAACCCATTTGCAACTTTCGATTGGTTCTTGCAATTATGGTGAGAAAAATGATCATGATAGTAATAGCAACAATAATGATGATGACGAGAAATTGGGTTTTTTGAGGCTGAAAGAGGAAGCTAAAGAACAAATGAGAGTGGCAATGGAGGAGAAAGCTGTGGCTGAAGAAGCAAGAAATGAAGCTAAGAAGCAAATTGAAATGGCTGAAAAGGAATTGGTAAATGCCAAGAGAATGAGACAACAAGCACAAGCTGAGTTACAAAGAGCCCTTGCTTTGAAAGAACATGCGATCAAGAAAATCAACTCCACCATCCTCCAAATCACTTGCCAAGTTTGTAGGCAACATTTTCATCCCTTGCCTAAAATTTGA 1224 39.38 MLADLSSPSLPCFEPLSNCFENNGTNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRTEATAVVRKRVFVCPEPSCLHHNPTHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDSCKLGHHQQQSEQKIPCLSRTASSPTPSPSSDTNFSFLKQNQTFSTTIDHHHHDGADKYSTKTTIIPPRIISHNHHQNLDLQLSTNSTSIHVSVSPKRHENYSTHLQLSIGSCNYGEKNDHDSNSNNNDDDEKLGFLRLKEEAKEQMRVAMEEKAVAEEARNEAKKQIEMAEKELVNAKRMRQQAQAELQRALALKEHAIKKINSTILQITCQVCRQHFHPLPKI 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28999151 29001309 + CcPI632755_01g016290.1 Cco01g1629 170491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1629 407 MobiDBLite consensus disorder prediction 195 218 - -
Cco01g1629 407 SMART c2h2final6 100 130 IPR013087 -
Cco01g1629 407 SMART c2h2final6 136 163 IPR013087 -
Cco01g1629 407 SMART c2h2final6 57 79 IPR013087 -
Cco01g1629 407 SUPERFAMILY beta-beta-alpha zinc fingers 56 156 IPR036236 -
Cco01g1629 407 MobiDBLite consensus disorder prediction 295 314 - -
Cco01g1629 407 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Cco01g1629 407 Coils Coil 322 384 - -
Cco01g1629 407 Gene3D Classic Zinc Finger 44 132 - -
Cco01g1629 407 MobiDBLite consensus disorder prediction 23 43 - -
Cco01g1629 407 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Cco01g1629 407 FunFam protein indeterminate-domain 12-like 36 106 - -
Cco01g1629 407 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 135 159 - -
Cco01g1629 407 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 96 130 - -
Cco01g1629 407 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 369 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0715 Cco-Chr1:7584910 Cco01g1629 Cco-Chr1:28999151 3.00E-97 dispersed
Cco01g1629 Cco-Chr1:28999151 Cco01g1868 Cco-Chr1:31219516 1.80E-113 dispersed
Cco01g1629 Cco-Chr1:28999151 Cco08g1706 Cco-Chr8:28416846 2.30E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58636 None None None None Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1629 K25871 - csv:101210748 736.487