Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco01g1633 | ATGGCTCTCGTCCGCGATCGCCGCCACTTAAACCTCCGCCTCCCCGACCTCTCCGACTGCCGTCCTCGCTTCCCTCTCCCCCTCCCTCCATCCTCCGCCCCCGCCCCTCCCGCCGTCCCCTCCGCCATCTCCTCCTCCGACCTCGACAAGCTCCAAGTCCTCGGCCACGGCAACGGTGGCACCGTCTACAAAGTCCGCCACAAACGCACCTCCACTACTTACGCTCTCAAAGTCGTCCATGGAGACTGCGATCCCACCGTCCGTCGCCAGGTTTTCAGAGAGATGGAGATTCTGCGCCGTACTGATTCTCCCTATGTCGTTCAGTGCCATGGAATCTTCGAGAAGCCTTCTGGAGATGTAACGATTTTGATGGAGTATATGGATCTAGGATCGCTTGATTCACTCTTGAAAAAGAATTCGACGTTGTCGGAATCGACGCTTGCTCACGTATCGCGTCAAGTTCTTAACGGACTTCATTATCTTCATTCTCACAAAATCATTCATCGCGATATTAAACCGTCGAACCTGTTGGTGAATAAGAATATGGAGGTTAAGATTGCTGATTTTGGAGTTAGTAAAATTATGTGCAGGACTCTGGATGCTTGTAATTCCTACGTCGGAACTTGCGCTTATATGAGTCCAGAGCGGTTCGATCCAGAGACTTACGGCGGAAATTACAACGGTTACGCCGGTGATATTTGGAGTTTGGGGCTTACTCTTCTGGAACTTTATTTAGGTCATTTTCCTTTTCTTCCGCCTGGACAGAGACCGGATTGGGCGACTCTGATGTGTGCGATTTGCTTCGGTGAACCACCTACGCTGCCGGAGAATGCGTCCGAGGAGTTTCGAAGCTTTGTTGAGTGTTGCTTGCAGAAGGAATCTAGCAAGAGGTGGACGGCGGCGCAATTGTTGACGCATCCGTTTGTATGCAGGGAATCATCGAGATCCGATCGATTAATCGGCGGTGGATTGAAGGATTCCGAATCACTGGCAGTTTAA | 999 | 51.45 | MALVRDRRHLNLRLPDLSDCRPRFPLPLPPSSAPAPPAVPSAISSSDLDKLQVLGHGNGGTVYKVRHKRTSTTYALKVVHGDCDPTVRRQVFREMEILRRTDSPYVVQCHGIFEKPSGDVTILMEYMDLGSLDSLLKKNSTLSESTLAHVSRQVLNGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPETYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPPGQRPDWATLMCAICFGEPPTLPENASEEFRSFVECCLQKESSKRWTAAQLLTHPFVCRESSRSDRLIGGGLKDSESLAV | 332 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 29063757 | 29064755 | + | CcPI632755_01g016330.1 | Cco01g1633 | 170495 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco01g1633 | 332 | CDD | PKc_MAPKK_plant_like | 46 | 309 | - | - | |
Cco01g1633 | 332 | Gene3D | Phosphorylase Kinase; domain 1 | 37 | 128 | - | - | |
Cco01g1633 | 332 | Gene3D | Transferase(Phosphotransferase) domain 1 | 130 | 320 | - | - | |
Cco01g1633 | 332 | Pfam | Protein kinase domain | 50 | 309 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco01g1633 | 332 | ProSitePatterns | Protein kinases ATP-binding region signature. | 54 | 77 | IPR017441 | GO:0005524(InterPro) | |
Cco01g1633 | 332 | FunFam | Mitogen-activated protein kinase kinase | 31 | 124 | - | - | |
Cco01g1633 | 332 | PANTHER | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED | 42 | 313 | - | GO:0000165(PANTHER)|GO:0004708(PANTHER) | |
Cco01g1633 | 332 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 166 | 178 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco01g1633 | 332 | ProSiteProfiles | Protein kinase domain profile. | 48 | 309 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco01g1633 | 332 | SUPERFAMILY | Protein kinase-like (PK-like) | 47 | 311 | IPR011009 | - | |
Cco01g1633 | 332 | FunFam | Mitogen-activated protein kinase 2 | 129 | 320 | - | - | |
Cco01g1633 | 332 | SMART | serkin_6 | 48 | 309 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g1633 | Cco-Chr1:29063757 | Cco07g1499 | Cco-Chr7:29072400 | 3.50E-86 | dispersed | |
Cco01g1633 | Cco-Chr1:29063757 | Cco11g0187 | Cco-Chr11:1842301 | 4.80E-64 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86525 | PF00069 | Pkinase | 1.40E-65 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco01g1633 | K20604 | - | csv:101203133 | 604.749 |