Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1633 ATGGCTCTCGTCCGCGATCGCCGCCACTTAAACCTCCGCCTCCCCGACCTCTCCGACTGCCGTCCTCGCTTCCCTCTCCCCCTCCCTCCATCCTCCGCCCCCGCCCCTCCCGCCGTCCCCTCCGCCATCTCCTCCTCCGACCTCGACAAGCTCCAAGTCCTCGGCCACGGCAACGGTGGCACCGTCTACAAAGTCCGCCACAAACGCACCTCCACTACTTACGCTCTCAAAGTCGTCCATGGAGACTGCGATCCCACCGTCCGTCGCCAGGTTTTCAGAGAGATGGAGATTCTGCGCCGTACTGATTCTCCCTATGTCGTTCAGTGCCATGGAATCTTCGAGAAGCCTTCTGGAGATGTAACGATTTTGATGGAGTATATGGATCTAGGATCGCTTGATTCACTCTTGAAAAAGAATTCGACGTTGTCGGAATCGACGCTTGCTCACGTATCGCGTCAAGTTCTTAACGGACTTCATTATCTTCATTCTCACAAAATCATTCATCGCGATATTAAACCGTCGAACCTGTTGGTGAATAAGAATATGGAGGTTAAGATTGCTGATTTTGGAGTTAGTAAAATTATGTGCAGGACTCTGGATGCTTGTAATTCCTACGTCGGAACTTGCGCTTATATGAGTCCAGAGCGGTTCGATCCAGAGACTTACGGCGGAAATTACAACGGTTACGCCGGTGATATTTGGAGTTTGGGGCTTACTCTTCTGGAACTTTATTTAGGTCATTTTCCTTTTCTTCCGCCTGGACAGAGACCGGATTGGGCGACTCTGATGTGTGCGATTTGCTTCGGTGAACCACCTACGCTGCCGGAGAATGCGTCCGAGGAGTTTCGAAGCTTTGTTGAGTGTTGCTTGCAGAAGGAATCTAGCAAGAGGTGGACGGCGGCGCAATTGTTGACGCATCCGTTTGTATGCAGGGAATCATCGAGATCCGATCGATTAATCGGCGGTGGATTGAAGGATTCCGAATCACTGGCAGTTTAA 999 51.45 MALVRDRRHLNLRLPDLSDCRPRFPLPLPPSSAPAPPAVPSAISSSDLDKLQVLGHGNGGTVYKVRHKRTSTTYALKVVHGDCDPTVRRQVFREMEILRRTDSPYVVQCHGIFEKPSGDVTILMEYMDLGSLDSLLKKNSTLSESTLAHVSRQVLNGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPETYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPPGQRPDWATLMCAICFGEPPTLPENASEEFRSFVECCLQKESSKRWTAAQLLTHPFVCRESSRSDRLIGGGLKDSESLAV 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29063757 29064755 + CcPI632755_01g016330.1 Cco01g1633 170495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1633 332 CDD PKc_MAPKK_plant_like 46 309 - -
Cco01g1633 332 Gene3D Phosphorylase Kinase; domain 1 37 128 - -
Cco01g1633 332 Gene3D Transferase(Phosphotransferase) domain 1 130 320 - -
Cco01g1633 332 Pfam Protein kinase domain 50 309 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g1633 332 ProSitePatterns Protein kinases ATP-binding region signature. 54 77 IPR017441 GO:0005524(InterPro)
Cco01g1633 332 FunFam Mitogen-activated protein kinase kinase 31 124 - -
Cco01g1633 332 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 42 313 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Cco01g1633 332 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g1633 332 ProSiteProfiles Protein kinase domain profile. 48 309 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g1633 332 SUPERFAMILY Protein kinase-like (PK-like) 47 311 IPR011009 -
Cco01g1633 332 FunFam Mitogen-activated protein kinase 2 129 320 - -
Cco01g1633 332 SMART serkin_6 48 309 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1633 Cco-Chr1:29063757 Cco07g1499 Cco-Chr7:29072400 3.50E-86 dispersed
Cco01g1633 Cco-Chr1:29063757 Cco11g0187 Cco-Chr11:1842301 4.80E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86525 PF00069 Pkinase 1.40E-65 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1633 K20604 - csv:101203133 604.749