Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1654 ATGTGGATGATGGGTTACAATGACGCTACAGATTTGAACTTCCCTTCCGATAACTCTTTCAATTCTCGCAAACTTAGACCTCTAATTCCTCGCCCTCTCTCTTCTTCTTCCTCTTCCTCCATTAACAATCTCATCCCCACCAACGATTTCTTCTCCCAATTTCATCACATGGCTACGGTGACGGATCAAAGTAAGAGAGAGTTGAACAATGTGTCGTCGTTGTCACCGCCTGTGGTGGTGAGCTCGCGGTGGAATCCGACGCCTGAGCAGTTGAGAGTGTTGGAGGAATTGTATCGGCGGGGGACTCGAACCCCCTCTGCCGATCAAATTCAACATATCACTGCTCAGCTTCGTCGTTACGGTAAGATTGAAGGTAAGAATGTGTTCTATTGGTTTCAAAATCATAAAGCTAGAGAACGACAGAAACGTCGTCGTCAGATGGAATCCGCCATCACTGCCGCCAACCTCTCAACTCGAGACGCTGAAATCCTCGAAAGGAAAGATTCAGGGTCGGGCAGGACAGTGTATGAAGAACAGACCAAAAACTGGGTGCCCTCTACAAACTGCAGTACACTTCCGGAGGAATCTGTTCCAATTCAAAGGGCGGCAAAAGGTAGTGTAATTGGAGGAGCAGATTGCAGAACAGAAAATGGATGGATTCAATTCGAGGAATTGCACCAAATAAGGAATAACAACACCAACACCAACAACAACTTTGCTGAAAAAAATACCAATAACATCAACAACAATATTAACAACTCAGCCTCCTTACAATTGATGCATTGTCCAGCAGCCGCTCTCTGTGGTGGCGGTGGCCGTGGAGGCGGCGGCGGCAGCGGCAGCCAACTAATGATGAACATTGCCCCCATCACCACCACAGCCACAGTGACAACAATAATGCACCCAAAATCTCATAGAAGAAGTAATATTTCAGGTAATTTTAATATAATTGGAGCGTACACTCAAAATGGGGTTGAAGAGTTGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGGAGGAGGAGGGTGTGGGGAATCTGAAACCCTACAACTTTTTCCATTGTGCAGTGACACAAGAAATGGTGAGATTATTGGTCGCCAAAATGGGTGTGAAACAGTGGAAAATTCAGCCATGAATAGTACTAATCTGACTCCACTTCAGTTCTTTGAATTCCTTCCATTGAAGAATTGA 1215 45.1 MWMMGYNDATDLNFPSDNSFNSRKLRPLIPRPLSSSSSSSINNLIPTNDFFSQFHHMATVTDQSKRELNNVSSLSPPVVVSSRWNPTPEQLRVLEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESAITAANLSTRDAEILERKDSGSGRTVYEEQTKNWVPSTNCSTLPEESVPIQRAAKGSVIGGADCRTENGWIQFEELHQIRNNNTNTNNNFAEKNTNNINNNINNSASLQLMHCPAAALCGGGGRGGGGGSGSQLMMNIAPITTTATVTTIMHPKSHRRSNISGNFNIIGAYTQNGVEELEEEEEEEEEEEEEEEEEGGGGGCGESETLQLFPLCSDTRNGEIIGRQNGCETVENSAMNSTNLTPLQFFEFLPLKN 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29304673 29307718 + CcPI632755_01g016540.1 Cco01g1654 170516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1654 404 MobiDBLite consensus disorder prediction 325 355 - -
Cco01g1654 404 FunFam WUSCHEL-related homeobox 4 81 148 - -
Cco01g1654 404 SMART HOX_1 79 146 IPR001356 GO:0003677(InterPro)
Cco01g1654 404 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 76 400 IPR044555 GO:0003700(InterPro)|GO:0099402(InterPro)
Cco01g1654 404 Pfam Homeodomain 82 141 IPR001356 GO:0003677(InterPro)
Cco01g1654 404 Gene3D - 81 148 - -
Cco01g1654 404 SUPERFAMILY Homeodomain-like 81 148 IPR009057 -
Cco01g1654 404 CDD homeodomain 83 143 IPR001356 GO:0003677(InterPro)
Cco01g1654 404 Coils Coil 321 346 - -
Cco01g1654 404 ProSiteProfiles 'Homeobox' domain profile. 87 142 IPR001356 GO:0003677(InterPro)
Cco01g1654 404 MobiDBLite consensus disorder prediction 325 349 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1654 Cco-Chr1:29304673 Cco08g1796 Cco-Chr8:29078436 1.30E-23 dispersed
Cco02g2212 Cco-Chr2:34722276 Cco01g1654 Cco-Chr1:29304673 2.40E-23 transposed
Cco03g0168 Cco-Chr3:1645044 Cco01g1654 Cco-Chr1:29304673 1.70E-25 transposed
Cco04g2125 Cco-Chr4:35098464 Cco01g1654 Cco-Chr1:29304673 1.40E-14 transposed
Cco01g1654 Cco-Chr1:29304673 Cco06g1628 Cco-Chr6:26894662 2.80E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58640 PF00046 Homeodomain 1.70E-19 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1654 - - - 0.0