Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1655 ATGAGAGTATATCTGAGATCTCTTGTAGCTCTCACTCTCCACACCCTCTTGATTTCCCACATTTCAGTTTTGGTCTCTGCCACTACAATAACACTCTACAACAAATGCCCTCATCCAGTTTGGCCTGGCATTCAGCCCAGCGCTGGTAAGCCCTTGTTGGCTCGTGGTGGCTTCAAGCTCCCACCCAACAAGGCTTACTCTTTACGCCTTCCAGCCCTTTGGTCTGGCCGCTTCTGGGGCCGCCATGGCTGTGCTTTTGACGCATCTGGAAGAGGAAAGTGCGCTACAGGGGATTGTGGTGGTGCTCTCTTCTGCAATGGCATTGGAGGCACTCCACCAGCCACTCTTGCTGAGATTACACTTGGAAATGACCAAGATTTCTATGATGTGAGTCTTGTTGATGGCTACAATCTGGCTATTTCCATTACTCCGTCTAAAGGCTCAGGGAAATGTAGCTATGCTGGCTGTGTGAGTGACCTTAACATGATGTGTCCTGTGGGTTTACAAGTTAGATCTCATGATAACAGGAGAGTGGTGGCCTGTAAAAGTGCTTGCTTTGCATTCAATTCTCCAAGGTATTGCTGCACAGGCAGCTTTGGGAATCCACAATCGTGCAAGCCGACTGCTTATTCAAAGATCTTTAAGGCTGCTTGTCCAAAGGCTTACTCTTATGCTTATGATGATCCCACTAGCATTGCAACTTGCACTGGTGGCAACTATTTGGTCACTTTTTGCCCTCATCACGGTTAG 750 48.13 MRVYLRSLVALTLHTLLISHISVLVSATTITLYNKCPHPVWPGIQPSAGKPLLARGGFKLPPNKAYSLRLPALWSGRFWGRHGCAFDASGRGKCATGDCGGALFCNGIGGTPPATLAEITLGNDQDFYDVSLVDGYNLAISITPSKGSGKCSYAGCVSDLNMMCPVGLQVRSHDNRRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSKIFKAACPKAYSYAYDDPTSIATCTGGNYLVTFCPHHG 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29316656 29317517 + CcPI632755_01g016550.1 Cco01g1655 170517

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1655 249 SUPERFAMILY Osmotin, thaumatin-like protein 28 247 IPR037176 -
Cco01g1655 249 CDD TLP-PA 29 245 - -
Cco01g1655 249 SMART tha2 30 246 IPR001938 -
Cco01g1655 249 PANTHER OS03G0233200 PROTEIN 17 246 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Cco01g1655 249 ProSitePatterns Thaumatin family signature. 90 105 IPR017949 -
Cco01g1655 249 PRINTS Pathogenesis-related protein signature 90 119 IPR001938 -
Cco01g1655 249 PRINTS Pathogenesis-related protein signature 236 245 IPR001938 -
Cco01g1655 249 PRINTS Pathogenesis-related protein signature 29 41 IPR001938 -
Cco01g1655 249 PRINTS Pathogenesis-related protein signature 77 88 IPR001938 -
Cco01g1655 249 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Cco01g1655 249 PIRSF PR5 1 249 IPR001938 -
Cco01g1655 249 Gene3D Thaumatin 28 246 IPR037176 -
Cco01g1655 249 ProSiteProfiles Thaumatin family profile. 27 248 IPR001938 -
Cco01g1655 249 FunFam Thaumatin-like protein 1a 28 246 - -
Cco01g1655 249 Pfam Thaumatin family 34 246 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1655 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1655 Cco-Chr1:29316656 Cco08g1717 Cco-Chr8:28503339 1.80E-71 dispersed
Cco05g1143 Cco-Chr5:10494282 Cco01g1655 Cco-Chr1:29316656 1.30E-60 transposed
Cco09g0418 Cco-Chr9:3752565 Cco01g1655 Cco-Chr1:29316656 1.10E-78 transposed
Cco10g1460 Cco-Chr10:27720641 Cco01g1655 Cco-Chr1:29316656 2.40E-61 transposed
Cco01g1655 Cco-Chr1:29316656 Cco10g2116 Cco-Chr10:34435318 1.20E-62 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g213 Blo04g00849 Blo16g00113 . . . Bpe13g00376 . . Cmo13g01030 Cmo18g00053 . . . . . Cpe20g00148 . . . . . . . . . . . . . . . . . . . Lsi02g00229 Csa01g00710 Chy12g01400 Cme12g01834 . . Bda11g01787 . . . Bma03g00919 . Sed08g1361 . . Cma13g00995 Cma18g00070 Car13g00828 Car18g00061 Cpe09g01116 . Bhi08g01289 Tan05g2196 Cmetu04g1577 Lac10g0286 Hepe07g2357 . . Cla04g01051 Cam04g1094 Cec01g1609 Cco01g1655 Clacu04g1120 Cmu04g1104 Cre01g1403 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001931 3 2 2 2 1 2 2 2 2 3 2 2 4 2 2 4 2 0 4 2 2 2 2 2 2 2 2 3 2 3 67