Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1657 ATGAAGAACCTCCTTAAGAAGTTCCACATCATGTCCAGTGGTCAGTCTGACGATGCAGCTGAAGGGTCTACTTCATCGAGGAGCAGTAAATTAATGGAGGTTTCTTCGCCTGATAGGCTGCCGTCTCGCTCCCGAACGACCCATTTCAATTCGGAGCATAAACCCTTCTCGGGGTTATCCGGTTGGTTGAACTCTGTTACAAATAGGCGTAGCCCCAGTCCTCCATCATCTTCCAATCCTACTGCAGGCGAGTTAATGGAGCCATCAGATTCAGTTTCTAGCAGAGATGTTGCAATGGATACATCTAGGCATGATTCAGGGTCGAGTAACTCGAGGGATCCTGATATAGAGGAAGAGTATCAGATACAGCTTGCTTTGGAACTGAGTGCTAGAGAGGATCCTGAGGCAGCTCAGATTGAGGCTGTGAAGCAGATTAGTTTGGGGTCATGTGATCCTGATAACACTCCAGCTGAAGTTATTGCCTTCAGATATTGGAATTACAATTCTCTTAGCTATGATGACAAGATCTTGGATGGCTTTTATGACCTATATGGAGTCTTCACTGAGTCCACCTCAGAAAGAATGCCTTCCCTAGTTGATCTGCAAGGAGCGCCAATGTCTGACAGTGTCACTTGGGAAGCAGTTCTGATTAATAAAGCTGCTGATGCTAACTTGTTGAAACTTGAACAGACAGCATTGGAGATGGCCATCAAAATGGGGACGGAATCCCCAATTTCTGTAAATAGTTATTTGGTGCGGAAGCTTGCTGTTTTAGTTTCAGATCATATGGGGGGACCAGTAGGCGATCCTGAAAAGATGTTGAGAAAATGGAGAAATCTTAGTTACAGCTTGAAAGCAACCCTTGGCAGTATGGTTTTGCCTCTTGGCTCCCTTACTGTAGGGTTGGCCCGTCATCGTGCATTGTTATTCAAGCTTTTGGCAGATGGCGTGGGTATTCCTTGTAGGTTGGTGAAGGGACCACAGTACACAGGTTCTGATGATGTGGCGATGAACTTCGTAAAGATTGATGATGGAAGGGAGTACATTGTGGATTTAATGGCAGATCCTGGTGCACTTATTCCAGCTGATGTTGCTGGATCGCATGTAGAGTATGATGGATCCCCTTTTTCAGCCAGTCCACTTTCTAGAGATGTTGATTCTTCTCAGGCAGCATCTTCAAGCAGTGGGGTTGGCAGTTCACTAGAGGGAAATTCAGATTTTGGGATATCAGATAGGAAGCCAAAGTTTCGGAATCTCAGTGCCACAAAGGAATATGATTCTCCCAATGTCGACAAGGGGCCATCACGTGATTTTGCTAGCAAATCAAATTATCCTGGCATGCATGTTAGATCACCTTCTTGGACTGAGGGTATTAGTTCACCTGCAGTGCGCAGAATGAAAGTAAAGGATGTTTCACAATACATGATTGATGCTGCCAAAGAGAATCCACGGTTGGCTCAAAAGCTTCATGACGTGTTACTTGAAAGTGGTGTGGTTGCTCCCCCTAACTTGTTTACTGAGGCATACCCTGACCAAATAGATGTTATTGTTGAGTCTAAGTCACCAACGGAAGACAAGGATCAAAGTAGAAAGGTGCCTGGTCTCTGTGAAAGTGTAGATAAGAATGATCCTCGTCCAGCTAACTTTTTGCCTCCCTTGCCTCAGCCCAGAATGCATTCTAGAGCCAGCCCTACCCATGGCCAACAACTGCACCTTAAACCTCTGGAATTTAACCTTTCTCTCGATTCAAGAGAAGCAGCCGGACAACCTATAGCCTTACCTTTTGAGGTAACACCAGTGAAGTATGGGAGAAATGTACCTGTTGCTGCAGCAGCAGCAGCTGCCGCAGCTGTTGTTGCATCATCAATGGTGGTAGCTGCAGCAAAGAGTACCGATGCAAATCTTGAAATTCCTGTAGCAGCTGCTGCCACCGCCACCGCTGCTGCAGTGGTTGCAACAACTGCAGCAGTCAACAAGCAATATGAGCAGGTTGAGGCCGATGCTACTCTTTATGAGCAGCGTGGAAGTGGAGATAGGGAGCATGATGCTTGTGGAGAAAATTCAGAGGGTGAACGAATATCGGATAGATCGGTTGGTAACGAAAGCACAAAATCCGATATTACCCTTGATGATGTTGCAGAATGCGAGATCCCATGGGAAGAAATCTCCTTGGGAGAGCGTATTGGACTTGGATCATATGGGGAGGTCTATCGTGGAGATTGGCATGGAACTGAGGTAGCTGTGAAGAGGTTTCTAGACCAGGACATTTCTGGCGAATCTCTTGAAGAATTCAAAAGTGAGGTTCGAATTATGAAAAGGCTTCGGCATCCGAATGTTGTTCTCTTCATGGGAGCTGTGACACGTGCTCCCCACCTTTCAATTGTTACAGAATTTCTTCCCAGAGGTAGCTTGTACAGGTTAATTCACCGTCCCAACAATCAATTAGATGAACGAAAGCGATTGAGGATGGCCCTTGATGCAGCTCGGGGGATGAATTATTTGCACAATTGCACGCCTGTTGTTGTACATCGTGATTTGAAGTCCCCAAATCTACTTGTTGATAAAAATTGGGTTGTGAAGGTATGTGATTTTGGTTTATCTAAAATGAAGCATAGCACATTTCTTTCTTCAAGGTCAACTGCTGGAACCGCTGAGTGGATGGCTCCAGAAGTGCTGAGAAATGAACCTTCAGATGAAAAGTGTGACGTTTATAGTTATGGAGTCATACTATGGGAGCTGTCTACAATGCAACAACCATGGGGAGGAATGAACCCAATGCAAGTTGTTGGTGCTGTTGGCTTTCAGCATCGCCGTCTTGACATCCCAGACAGTTTAGATCCTGCCATTGCCGACATTATTAGGAAATGCTGGCAAACAGATCCAAGATTAAGACCTTCATTTGCCGAGATTATGGCTGCGCTAAAGCCGCTGCAGAAGCCAATGTCGAGTTCTCAAGTACTGAGACCAAATGCTCCTGCAGTTGCAGGTGGATTGTTTGAACAGAAGATGATAAATGGGAATGGAGAAACAAAGCATTTTATTCTTTCTATCTATCTTCTTGTAGTTGTGATCATGGCTTCTCTTTTCGGATCAACTGCATTTCTCTCCCACTCACTTACCAGAACTTATCACTTAGCTTCCTCACAAACCCCTTCACCTTCAACCCCACCTTCCCAACCGCCGCAAACTCCCTCCCCATCTCCATCTCTGAGCACTTCTTCGTCGGAGCAACTAAAACCAGCCCCATCAAAGGTGGAGCAACAGAGGCCTACCACCAATGTAGACTCTACGGATTGGATTGCTTCAACTTTAACAAGGCGATTCGGGCTCGGCGCTGGCCTTGCGTGGGCTGCTTTTCTCGCCGTTGGTGTAGTCTCCGAACAGATCAAAACTCGCCTCGAAGTCTCTCAAGAAGAAGCAAATACAAGAAATGTTGAAAAGGAAGAGGAAGTAGTGCTACCCAATGGCATAAGGTATTTCGAGCTGCGTGTTGGCGGCGGTGCCACACCAAGAACCGGGGACTTGGTTGTGATTGATCTCAAGGGAAAAGTACAAGGCAGTGATGAAGTATTTGTAAATACATTTGAAAAAGAAAGTAAGCCACTGGCTCTGGTGATGGGCTCAAGACCTTACAGCAAAGGAATGTGTGAAGGTTTGGAATATGTGTTGAGATCCATGAAATCAGGTGGTAGGAGGAGAGTTATAATTCCTTCTAGTTTGGGGTTTGGAGAGAAGGGTGCTGATTTAGGTAATGGGGTTCAAATTCCTCCATTTGCAACTTTAGAGTATGTTGTTGAGATTGATAAGGTTTCCATTGCACCTGCTTGA 3828 45.64 MKNLLKKFHIMSSGQSDDAAEGSTSSRSSKLMEVSSPDRLPSRSRTTHFNSEHKPFSGLSGWLNSVTNRRSPSPPSSSNPTAGELMEPSDSVSSRDVAMDTSRHDSGSSNSRDPDIEEEYQIQLALELSAREDPEAAQIEAVKQISLGSCDPDNTPAEVIAFRYWNYNSLSYDDKILDGFYDLYGVFTESTSERMPSLVDLQGAPMSDSVTWEAVLINKAADANLLKLEQTALEMAIKMGTESPISVNSYLVRKLAVLVSDHMGGPVGDPEKMLRKWRNLSYSLKATLGSMVLPLGSLTVGLARHRALLFKLLADGVGIPCRLVKGPQYTGSDDVAMNFVKIDDGREYIVDLMADPGALIPADVAGSHVEYDGSPFSASPLSRDVDSSQAASSSSGVGSSLEGNSDFGISDRKPKFRNLSATKEYDSPNVDKGPSRDFASKSNYPGMHVRSPSWTEGISSPAVRRMKVKDVSQYMIDAAKENPRLAQKLHDVLLESGVVAPPNLFTEAYPDQIDVIVESKSPTEDKDQSRKVPGLCESVDKNDPRPANFLPPLPQPRMHSRASPTHGQQLHLKPLEFNLSLDSREAAGQPIALPFEVTPVKYGRNVPVAAAAAAAAAVVASSMVVAAAKSTDANLEIPVAAAATATAAAVVATTAAVNKQYEQVEADATLYEQRGSGDREHDACGENSEGERISDRSVGNESTKSDITLDDVAECEIPWEEISLGERIGLGSYGEVYRGDWHGTEVAVKRFLDQDISGESLEEFKSEVRIMKRLRHPNVVLFMGAVTRAPHLSIVTEFLPRGSLYRLIHRPNNQLDERKRLRMALDAARGMNYLHNCTPVVVHRDLKSPNLLVDKNWVVKVCDFGLSKMKHSTFLSSRSTAGTAEWMAPEVLRNEPSDEKCDVYSYGVILWELSTMQQPWGGMNPMQVVGAVGFQHRRLDIPDSLDPAIADIIRKCWQTDPRLRPSFAEIMAALKPLQKPMSSSQVLRPNAPAVAGGLFEQKMINGNGETKHFILSIYLLVVVIMASLFGSTAFLSHSLTRTYHLASSQTPSPSTPPSQPPQTPSPSPSLSTSSSEQLKPAPSKVEQQRPTTNVDSTDWIASTLTRRFGLGAGLAWAAFLAVGVVSEQIKTRLEVSQEEANTRNVEKEEEVVLPNGIRYFELRVGGGATPRTGDLVVIDLKGKVQGSDEVFVNTFEKESKPLALVMGSRPYSKGMCEGLEYVLRSMKSGGRRRVIIPSSLGFGEKGADLGNGVQIPPFATLEYVVEIDKVSIAPA 1275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29324585 29340013 - CcPI632755_01g016570.1 Cco01g1657 170519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1657 1275 ProSiteProfiles Protein kinase domain profile. 722 978 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g1657 1275 MobiDBLite consensus disorder prediction 672 699 - -
Cco01g1657 1275 Gene3D Transferase(Phosphotransferase) domain 1 801 986 - -
Cco01g1657 1275 SUPERFAMILY FKBP-like 1097 1270 - -
Cco01g1657 1275 SMART serkin_6 722 977 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g1657 1275 MobiDBLite consensus disorder prediction 1053 1067 - -
Cco01g1657 1275 ProSitePatterns Protein kinases ATP-binding region signature. 728 749 IPR017441 GO:0005524(InterPro)
Cco01g1657 1275 MobiDBLite consensus disorder prediction 1 116 - -
Cco01g1657 1275 PRINTS Tyrosine kinase catalytic domain signature 882 892 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g1657 1275 PRINTS Tyrosine kinase catalytic domain signature 945 967 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g1657 1275 PRINTS Tyrosine kinase catalytic domain signature 835 853 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g1657 1275 PRINTS Tyrosine kinase catalytic domain signature 901 923 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g1657 1275 PRINTS Tyrosine kinase catalytic domain signature 796 809 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g1657 1275 MobiDBLite consensus disorder prediction 16 44 - -
Cco01g1657 1275 FunFam Peptidylprolyl isomerase 1125 1273 - -
Cco01g1657 1275 MobiDBLite consensus disorder prediction 380 406 - -
Cco01g1657 1275 MobiDBLite consensus disorder prediction 672 705 - -
Cco01g1657 1275 MobiDBLite consensus disorder prediction 97 116 - -
Cco01g1657 1275 Pfam Ethylene-responsive protein kinase Le-CTR1 157 360 - -
Cco01g1657 1275 SUPERFAMILY Protein kinase-like (PK-like) 703 972 IPR011009 -
Cco01g1657 1275 Coils Coil 1130 1150 - -
Cco01g1657 1275 ProSitePatterns Serine/Threonine protein kinases active-site signature. 841 853 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g1657 1275 MobiDBLite consensus disorder prediction 378 447 - -
Cco01g1657 1275 FunFam Serine/threonine-protein kinase isoform 1 713 800 - -
Cco01g1657 1275 MobiDBLite consensus disorder prediction 520 568 - -
Cco01g1657 1275 PANTHER SERINE-THREONINE PROTEIN KINASE 65 975 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cco01g1657 1275 FunFam Serine/threonine-protein kinase CTR1 801 984 - -
Cco01g1657 1275 MobiDBLite consensus disorder prediction 1046 1094 - -
Cco01g1657 1275 MobiDBLite consensus disorder prediction 520 538 - -
Cco01g1657 1275 Gene3D - 1132 1270 IPR046357 GO:0003755(InterPro)
Cco01g1657 1275 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 1168 1267 IPR001179 GO:0003755(InterPro)
Cco01g1657 1275 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 1173 1271 IPR001179 GO:0003755(InterPro)
Cco01g1657 1275 Gene3D Phosphorylase Kinase; domain 1 715 799 - -
Cco01g1657 1275 CDD STKc_MAP3K-like 728 974 - -
Cco01g1657 1275 Pfam Protein tyrosine and serine/threonine kinase 723 974 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco01g1657 1275 MobiDBLite consensus disorder prediction 1068 1094 - -
Cco01g1657 1275 MobiDBLite consensus disorder prediction 51 88 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1657 Cco-Chr1:29324585 Cco05g2022 Cco-Chr5:29324219 1.20E-184 dispersed
Cco06g0455 Cco-Chr6:5014812 Cco01g1657 Cco-Chr1:29324585 1.50E-92 transposed
Cco02g1907 Cco-Chr2:31947509 Cco01g1657 Cco-Chr1:29324585 2.70E-07 transposed
Cco01g1657 Cco-Chr1:29324585 Cco10g2133 Cco-Chr10:34559669 5.00E-24 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86527 PF07714 PK_Tyr_Ser-Thr 1.70E-66 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1657 - - - 0.0