Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco01g1658 ATGCTGCAATTCAATGGCGGAGAACTGAATCAGAACCGAGGAAGGCGACCGCTGGTTTTATACGGTTTGATACATATTGTAATCGAATTGACGTTAATCTGCTCTACCATGGATCGCCTCAATAAGGGTGATAAGCAATCAGAATTTTTCACAGAGTATGGAGAAGCAAGCCGATACCAAATTCAAGAAGTTGTTGGGAAAGGAAGCTATGGAGTTGTTGGTTCTGCAATTGATACCCAGACTGGTGAAAGAGTTGCCATCAAGAAAATTAATGATGTGTTTGAGCATGTATCTGATGCCATTCGTATCCTCAGAGAAATTAAGCTTCTTCGGATGCTTCATCATCCGAATATTGTAGAGATAAAACATATTATGCTTCCTCCCTCACAACGAGAATTCAAAGATATATATCTTGTTTTTGAGTTGATGAAGTCTGATCTTCACCATGTAATTAAGGCAAATAATGATCTTTCTCCCAAGCAGCATAAGTTTTTTCTCTACCAGCTTCTTAGTGGCTTAAAATATATTCATGCGGCAAATGTCCTTCATCGAGATTTGAAGCCGAAAAACATACTTGCTAATGCTGACTGCAGACTGAAGATATGTGATTTTGGACTTGCTCGTGTATCTTTTAGTGATGCGCCATCTACTATTTTTTGGACAGATTATGTTGCAACTCGATGGTATCGTGCTCCCGAACTCTGTGGATCATTTTTCTCGAGATATACCCCTGCGATAGATATATGGAGTATCGGATGCATATTTGCGGAAATGCTTACGGGGAAACCTTTGTTTCCTGGAAAAAATGTGGTTCACCAATTAGATCTAATTACCGATCTGTTTGGCACTCCTGAACCTGAGGCCATAGCGAAGATTCGGAATGAGAAGGCAAGAAGGTACCTTGGAAACATGCGTAAAAAACCACCAGTTCCATTCTCACGAAAGTTTCCTAATGTTGACCCATTGGCACTTTGTTTACTGGAACGTCTCCTGGCATTTGATCCCAAATGTCGTCTCACAGCTGCAGAGGCACTTGCTGATCCTTACTTCAACGGTATGGCGAAACCAGAACTTGAGCCTTCTATTCAACCAATTTCGAAACTTGAGTTTGAGTTTGAGAGGAGGAGGTTATCAAAAGATGATGTTAGAGAGTTGATTTATGCGGAGATTTTAGAGTATCATCCCCAGATGCGTCAGGAGTGTCTACGTGATGGAGATCATCAATCTACCTTTATGTATCCAAGTGGCGTCGATCGATTTAAGCTTCAGTTTGCACATCTGGAAGAGCACCATGGTATAGGTGAAAGAAGAAGTCCACTTCAAAGGCAGAACATTTCTTTACCTCGGGAGCGGGTTAGTCCTACTGAGCAGAACACTGAGAATAAAGCTGATTTTGAAAGGGGGAAAGATAAGAGTTCTTATCTCTTGAAAAGTGCTAGTATTAGTGCATCGAGGTGTGTTGGGGTAACACCAAAGGAGAAGTCTGAGGCGGAAGAAACGAGTACTGAAGTGAAAAATGAAGCAGTGGATGGCTTGTCTCGGAAGATCGCAGTCCTTCAGACTTGA 1566 41.63 MLQFNGGELNQNRGRRPLVLYGLIHIVIELTLICSTMDRLNKGDKQSEFFTEYGEASRYQIQEVVGKGSYGVVGSAIDTQTGERVAIKKINDVFEHVSDAIRILREIKLLRMLHHPNIVEIKHIMLPPSQREFKDIYLVFELMKSDLHHVIKANNDLSPKQHKFFLYQLLSGLKYIHAANVLHRDLKPKNILANADCRLKICDFGLARVSFSDAPSTIFWTDYVATRWYRAPELCGSFFSRYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLITDLFGTPEPEAIAKIRNEKARRYLGNMRKKPPVPFSRKFPNVDPLALCLLERLLAFDPKCRLTAAEALADPYFNGMAKPELEPSIQPISKLEFEFERRRLSKDDVRELIYAEILEYHPQMRQECLRDGDHQSTFMYPSGVDRFKLQFAHLEEHHGIGERRSPLQRQNISLPRERVSPTEQNTENKADFERGKDKSSYLLKSASISASRCVGVTPKEKSEAEETSTEVKNEAVDGLSRKIAVLQT 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29351806 29356537 + CcPI632755_01g016580.1 Cco01g1658 170520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco01g1658 521 ProSitePatterns MAP kinase signature. 94 197 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g1658 521 MobiDBLite consensus disorder prediction 433 469 - -
Cco01g1658 521 MobiDBLite consensus disorder prediction 491 507 - -
Cco01g1658 521 MobiDBLite consensus disorder prediction 455 469 - -
Cco01g1658 521 FunFam Mitogen-activated protein kinase 145 373 - -
Cco01g1658 521 Pfam Protein kinase domain 59 350 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g1658 521 CDD STKc_TDY_MAPK 58 395 - -
Cco01g1658 521 SMART serkin_6 59 350 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g1658 521 FunFam Mitogen-activated protein kinase 47 152 - -
Cco01g1658 521 ProSitePatterns Protein kinases ATP-binding region signature. 65 89 IPR017441 GO:0005524(InterPro)
Cco01g1658 521 Gene3D Transferase(Phosphotransferase) domain 1 145 373 - -
Cco01g1658 521 SUPERFAMILY Protein kinase-like (PK-like) 55 357 IPR011009 -
Cco01g1658 521 MobiDBLite consensus disorder prediction 439 454 - -
Cco01g1658 521 MobiDBLite consensus disorder prediction 487 507 - -
Cco01g1658 521 ProSiteProfiles Protein kinase domain profile. 59 350 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco01g1658 521 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 56 391 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Cco01g1658 521 Gene3D Phosphorylase Kinase; domain 1 75 396 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1658 Cco-Chr1:29351806 Cco06g0584 Cco-Chr6:6267429 2.70E-186 dispersed
Cco01g1658 Cco-Chr1:29351806 Cco06g1633 Cco-Chr6:26950374 3.00E-209 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86528 PF00069 Pkinase 1.80E-67 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco01g1658 - - - 0.0